Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02457 ATGGAGGACCATCATCATCATCATCATCAACACCATGAACAGCAGCAGCAGCAGCAGCAACAGTATGCCATCACTGATCTCAGACAACTCATGAACGGCCCGAGGTCCACCCATTTCCCCTCCATGCCGCCGCAGCCCAAGGCGGAGCTGTTCCCCGGCGGCCACCCCAACCTGGCCGCCTCGCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCCGACATAATGCCTCGGTGTCTTCATGACTTTGCATCTACCGATTCCGCCACGAATAATAACAACACGAGCATCGCTGCTGCCACTCCCACCACCACCACTAGTGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGGTGAGACCGCAGGATGCATCGGTGGAGATGCCTCCACTGGAAGATGGCCCAGACAAGAGACACTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGCGGGAAGAAGTGCCGGGAGAAGTTTGAGAACCTCTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCTGGAAGACAGGATGGGAAACATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAACCTCGGTACCAGAAACCAATTTTGGTAGTGGCAGCCTTCGTTTCCACTCAAACAGCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCACTCCCAAAAGCATTGCGATAGCCTAAGTCTCACCAACACCACTGATTTGGACACGTCATCATCGGATGACAACGATCAGAATAGCACTGGGGGACTCAAGGACAACGACTCCACGGAGAAGAGGAGAAAGAGGTTGAGCGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGACAAGCAAGAGGAGTGGTTGGACAAACTCACGAAGACACTGGAACAGAAAGAAAAGGAGAGGGTGCTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGTAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTACAAAAACTAACAGGAAATGAGATGATAAAGAGTACTCAATCTCCTGAGGGTGTAATGGTAACTGGAATTCAGAACCACAGTGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACCACTGCCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTACCAGGCTTCAGCAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCGGAAGAGTTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTAGTGTTCAAAGAGAAATGGGAAAGTACCAGCAACTACGCAAGGAATGCTAAAGATGGAAACAAGAAGCGCAAGGAAGACTCTAGAGGTTGTTTCTACTTCGATAACAGCGAACAGTCTTCCCTGTATAACCAAGGAGGAGCCTATTGTGATATTAATGATCAAAGGCACGAGAGGAGGCTGCAAAATGATGGTTCTTCGCCTTCAAATTCAAATGTTGGAAATGCAGTTGCTGGTGATCACTGCTTTCCCTTCTTGATGACTGAGAGTGCAAATTTGTGGGAGAACTATAGCTTAAAGGTTAGTAAAGCAAGTCAAAACCAGTGA 1764 0.4688 MEDHHHHHHQHHEQQQQQQQQYAITDLRQLMNGPRSTHFPSMPPQPKAELFPGGHPNLAASQHFEMMMFGRQVADIMPRCLHDFASTDSATNNNNTSIAAATPTTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQTSVPETNFGSGSLRFHSNSHNPSQTNQEMFHSQKHCDSLSLTNTTDLDTSSSDDNDQNSTGGLKDNDSTEKRRKRLSGRSWKVKIKDFIDSQMRKLVDKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEMIKSTQSPEGVMVTGIQNHSENLNEDGSEILNSTTARGAESWPESEITRLQQLRAEMETRYMQSGCSEEFMWEEIATKMACFGYERSALVFKEKWESTSNYARNAKDGNKKRKEDSRGCFYFDNSEQSSLYNQGGAYCDINDQRHERRLQNDGSSPSNSNVGNAVAGDHCFPFLMTESANLWENYSLKVSKASQNQ 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02457 587 PANTHER FI21293P1 86 544 - -
Vian2g02457 587 CDD GT1 433 497 - -
Vian2g02457 587 MobiDBLite consensus disorder prediction 1 20 - -
Vian2g02457 587 MobiDBLite consensus disorder prediction 223 302 - -
Vian2g02457 587 MobiDBLite consensus disorder prediction 88 113 - -
Vian2g02457 587 MobiDBLite consensus disorder prediction 223 290 - -
Vian2g02457 587 CDD GT1 133 198 - -
Vian2g02457 587 Gene3D - 433 495 - -
Vian2g02457 587 Gene3D - 134 196 - -
Vian2g02457 587 Pfam Myb/SANT-like DNA-binding domain 432 515 IPR044822 -
Vian2g02457 587 Pfam Myb/SANT-like DNA-binding domain 133 219 IPR044822 -
Vian2g02457 587 Coils Coil 323 350 - -
Vian2g02457 587 ProSiteProfiles Myb-like domain profile. 126 191 IPR001005 -
Vian2g02457 587 FunFam trihelix transcription factor PTL-like 134 196 - -
Vian2g02457 587 FunFam Trihelix transcription factor GT-2 433 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02457 Vian-Chr2 45123855 45126429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02457 16 582 Trihelix Transcription Factor Family AT5G03680 45.230 3.49e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian2g02457 Myb_DNA-bind_4 6.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02457 - - gmx:100813245 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02457 2 45123855 45126429 Vian2g02457 2 45123855 45126429 ECH
Vian2g02457 2 45123855 45126429 Vian3g02123 3 30167300 30170222 PCT