Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian2g02453 | ATGAACATGGACAGTACGCGCAGATCGTTGGATAGATCTAGAGACCTGGGTTCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCTAGACAGTTACCTCAAAGACAGCAAGGGTCCGGGATAGTTACTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGACAGGGACACCGAAAGCAGCGAATCAAGTCGCGGGTACCAGCCTCAGCCACAGCCTCACCATGAGCTTGTGACTCAGTATAAGACTGCGCTTGCTGAACTTACTTTCAATTCCAAGCCCATAATTACAAACTTGACTATTATTGCTGGGGAGAATCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTCTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGAGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAAGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACCGGAGCTTTGTTAAAGTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTTCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGTGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACATCGTGAGCCAGGCCTAAATTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCTAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACACCCTTACGGGGAAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCATCACACAATTGATAAGTTGACTCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTGTCAAGAAGGGGAACCAATCTCTTACGTCAAAGGCAATAGTAGGAATGTCCAAAATTGTAGAGCAACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTCACAACGACAGTCTCCATCACTACCAGGAACAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAAAGCCCCAGGATCACAAAACATCTCAATTTTTGGGAGGTCCAACTGGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGCCACTGCAGCCCGACTCTGCTCAGGCTGAAGTTTTTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAAAGGAGTTTCAGAACAGTCGACCAAAAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGTAGGTCTTCTCCTGCCACATTAACTTCTTCAGGGTCTGCAGTGGTATCACCAGCTTTATTGGATCCTCTGCACAAAGATTCATCTTCACTACCCAAAAAACCTCAAGGAAAGGTTGGACAACCACCACAAAGGCTTAATACTCAACCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAATAATGTAAACCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCACCGACTGTGGTACCAAGCGAGGTGCTGAAGGGATCCAAAGATAAAACTGCAAACATCAGCACCAATAGTTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGCATCATCTGCCAGAGATGAGGAAGACGCTTCTACAAAATCCTCTCTACCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCTCTCATCATTGCAAAATTTGCAGTATTAGGTTTAAACAAGAACAGCAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGATCCAATTAAAGTATCCAGAAGTTGGTATGCTAAGTCAAGTGATTGGATTGCTGGCAAGGTAGAATACTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTACTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCTGTTTACATGAACTGCTCGGATGTCAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCCTATCAGAGAATTCAATCGTCACCAATTTGGGTAATGATTAA | 3060 | 0.4333 | MNMDSTRRSLDRSRDLGSKKPRLIDELSARQLPQRQQGSGIVTSLVSARARVNDRDTESSESSRGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVSEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLKAHREPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETESPSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEKPQDHKTSQFLGGPTGQHIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQPLQPDSAQAEVFAKTKLPQSKVSLTKGVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLTSSGSAVVSPALLDPLHKDSSSLPKKPQGKVGQPPQRLNTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETESPTVVPSEVLKGSKDKTANISTNSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFSHHCKICSIRFKQEQQYKRHLEWHATREHDPIKVSRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDVNDEMESRNVGPIIHAKCLSENSIVTNLGND | 1019 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian2g02453 | 1019 | CDD | CID_Pcf11 | 77 | 187 | IPR047415 | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 795 | 837 | - | - | |
Vian2g02453 | 1019 | SUPERFAMILY | ENTH/VHS domain | 72 | 200 | IPR008942 | - | |
Vian2g02453 | 1019 | Gene3D | - | 67 | 197 | IPR008942 | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 691 | 711 | - | - | |
Vian2g02453 | 1019 | SMART | 558neu5 | 75 | 197 | IPR006569 | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 736 | 754 | - | - | |
Vian2g02453 | 1019 | ProSiteProfiles | CID domain profile. | 72 | 200 | IPR006569 | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 533 | 568 | - | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 30 | 46 | - | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
Vian2g02453 | 1019 | FunFam | polyadenylation and cleavage factor homolog 4 | 69 | 197 | - | - | |
Vian2g02453 | 1019 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 875 | 895 | IPR013087 | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 674 | 754 | - | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 533 | 598 | - | - | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Vian2g02453 | 1019 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 58 | 1010 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Vian2g02453 | 1019 | MobiDBLite | consensus disorder prediction | 795 | 816 | - | - | |
Vian2g02453 | 1019 | Pfam | CID domain | 81 | 190 | IPR006569 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian2g02453 | Vian-Chr2 | 45075501 | 45081064 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian2g02453 | 49 | 412 | C2H2 Transcription Factor Family | AT4G04885 | 36.813 | 3.15e-53 | 198 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vian2g02453 | CID | 1.8e-12 | CL0020 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian2g02453 | K14400 | - | gmx:100788958 | 1521.14 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian2g02453 | 2 | 45075501 | 45081064 | Vian2g02453 | 2 | 45075501 | 45081064 | ECH |