Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02453 ATGAACATGGACAGTACGCGCAGATCGTTGGATAGATCTAGAGACCTGGGTTCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCTAGACAGTTACCTCAAAGACAGCAAGGGTCCGGGATAGTTACTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGACAGGGACACCGAAAGCAGCGAATCAAGTCGCGGGTACCAGCCTCAGCCACAGCCTCACCATGAGCTTGTGACTCAGTATAAGACTGCGCTTGCTGAACTTACTTTCAATTCCAAGCCCATAATTACAAACTTGACTATTATTGCTGGGGAGAATCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTCTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGAGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAAGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACCGGAGCTTTGTTAAAGTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTTCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGTGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACATCGTGAGCCAGGCCTAAATTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCTAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACACCCTTACGGGGAAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCATCACACAATTGATAAGTTGACTCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTGTCAAGAAGGGGAACCAATCTCTTACGTCAAAGGCAATAGTAGGAATGTCCAAAATTGTAGAGCAACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTCACAACGACAGTCTCCATCACTACCAGGAACAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAAAGCCCCAGGATCACAAAACATCTCAATTTTTGGGAGGTCCAACTGGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGCCACTGCAGCCCGACTCTGCTCAGGCTGAAGTTTTTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAAAGGAGTTTCAGAACAGTCGACCAAAAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGTAGGTCTTCTCCTGCCACATTAACTTCTTCAGGGTCTGCAGTGGTATCACCAGCTTTATTGGATCCTCTGCACAAAGATTCATCTTCACTACCCAAAAAACCTCAAGGAAAGGTTGGACAACCACCACAAAGGCTTAATACTCAACCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAATAATGTAAACCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCACCGACTGTGGTACCAAGCGAGGTGCTGAAGGGATCCAAAGATAAAACTGCAAACATCAGCACCAATAGTTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGCATCATCTGCCAGAGATGAGGAAGACGCTTCTACAAAATCCTCTCTACCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCTCTCATCATTGCAAAATTTGCAGTATTAGGTTTAAACAAGAACAGCAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGATCCAATTAAAGTATCCAGAAGTTGGTATGCTAAGTCAAGTGATTGGATTGCTGGCAAGGTAGAATACTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTACTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCTGTTTACATGAACTGCTCGGATGTCAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCCTATCAGAGAATTCAATCGTCACCAATTTGGGTAATGATTAA 3060 0.4333 MNMDSTRRSLDRSRDLGSKKPRLIDELSARQLPQRQQGSGIVTSLVSARARVNDRDTESSESSRGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVSEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLKAHREPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETESPSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEKPQDHKTSQFLGGPTGQHIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQPLQPDSAQAEVFAKTKLPQSKVSLTKGVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLTSSGSAVVSPALLDPLHKDSSSLPKKPQGKVGQPPQRLNTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETESPTVVPSEVLKGSKDKTANISTNSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFSHHCKICSIRFKQEQQYKRHLEWHATREHDPIKVSRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDVNDEMESRNVGPIIHAKCLSENSIVTNLGND 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02453 1019 CDD CID_Pcf11 77 187 IPR047415 -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 795 837 - -
Vian2g02453 1019 SUPERFAMILY ENTH/VHS domain 72 200 IPR008942 -
Vian2g02453 1019 Gene3D - 67 197 IPR008942 -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 691 711 - -
Vian2g02453 1019 SMART 558neu5 75 197 IPR006569 -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 736 754 - -
Vian2g02453 1019 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 533 568 - -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 30 46 - -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 1 73 - -
Vian2g02453 1019 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Vian2g02453 1019 ProSitePatterns Zinc finger C2H2 type domain signature. 875 895 IPR013087 -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 674 754 - -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 533 598 - -
Vian2g02453 1019 MobiDBLite consensus disorder prediction 1 26 - -
Vian2g02453 1019 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 1010 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vian2g02453 1019 MobiDBLite consensus disorder prediction 795 816 - -
Vian2g02453 1019 Pfam CID domain 81 190 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02453 Vian-Chr2 45075501 45081064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02453 49 412 C2H2 Transcription Factor Family AT4G04885 36.813 3.15e-53 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g02453 CID 1.8e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02453 K14400 - gmx:100788958 1521.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02453 2 45075501 45081064 Vian2g02453 2 45075501 45081064 ECH