Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02448 ATGTCAAAATCTAGTAGCAATAGTAGTGTCGACAGTCGGGTTTTGGTGTCACCGGATGCCACCTCGTCCCTAGATAGCAAGAATGTTGTCCATGTTGCAACGCCTCACCCTTCTAAGCAGGCTGGAAAAGCAATTGCAGATAACAAGCGGCAGACTCCGAAGTCAGGGGGAGATTACAGCTGCAAGCCTTGCAGCAGGTCATTTAAGACAGAAGATGCCTTAAACTCTCATAATAGGGCGAAACACAGTGCTAAGTAA 258 0.4729 MSKSSSNSSVDSRVLVSPDATSSLDSKNVVHVATPHPSKQAGKAIADNKRQTPKSGGDYSCKPCSRSFKTEDALNSHNRAKHSAK 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02448 85 MobiDBLite consensus disorder prediction 1 85 - -
Vian2g02448 85 Pfam C2H2-type zinc finger 59 83 - -
Vian2g02448 85 ProSitePatterns Zinc finger C2H2 type domain signature. 61 82 IPR013087 -
Vian2g02448 85 MobiDBLite consensus disorder prediction 1 29 - -
Vian2g02448 85 Gene3D Classic Zinc Finger 46 85 - -
Vian2g02448 85 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 85 IPR013087 -
Vian2g02448 85 SUPERFAMILY beta-beta-alpha zinc fingers 54 81 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02448 15 84 C2H2 Transcription Factor Family AT5G03740 50.649 6.77e-17 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g02448 zf-C2H2_6 2.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02448 - - gmx:100812152 118.627