Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02437 ATGGATTGGCATTACACCACAAAACCATTTCTTCCTCACCCAGACACCTTAAGCTTCTTCTACAACTACAACAACAACCCTTATCCAGGAGTGGAAGTGCAACAAGCCACATTGTTGGAGACAGGAGAAGGTTCTATTCCGTCAATGCACAACGGAAGCAAAGAGAAGAAGAAGCGGTTAACAAGCAACCAGTTAGAAATATTGGAGAGGAGCTTCCAGGAGGAAACAAAGTTAGACCCTGAAAAGAAGATGAAACTTTCGAGGGAGCTAGGCCTTCAGCCTCGCAAAATCGCTGTTTGGTTCCAAAATAGACGTACGAGGTGGAAAACCAAGCAGCTTGAGCACTTATACGATGCTCTCAAGCACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTAAAGGCACTGCTAAGTAAAGAGCAAGGTTTTGGGAAGCAAAGATTGGGAGGTTATCCAGAAATATCTGGAGTAGAAACGGTAGAAAGCACTTCAGAGGGTCTGAGGGGTTCCAACAAGGGAAAGAGTAACATTGAGCAGGTCGCAGATGAGGGCTTTTGCTCTTTCAGCGTGGAGGATTATAACACTGTTTCAGTGCCTTTCTGCCAGTGGTCTGCTGTACCTTATTAG 651 0.447 MDWHYTTKPFLPHPDTLSFFYNYNNNPYPGVEVQQATLLETGEGSIPSMHNGSKEKKKRLTSNQLEILERSFQEETKLDPEKKMKLSRELGLQPRKIAVWFQNRRTRWKTKQLEHLYDALKHQYDVISNEKQKLQEEVMKLKALLSKEQGFGKQRLGGYPEISGVETVESTSEGLRGSNKGKSNIEQVADEGFCSFSVEDYNTVSVPFCQWSAVPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02437 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vian2g02437 216 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Vian2g02437 216 SUPERFAMILY Homeodomain-like 44 113 IPR009057 -
Vian2g02437 216 CDD homeodomain 54 112 IPR001356 GO:0003677
Vian2g02437 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 169 IPR045224 GO:0003700
Vian2g02437 216 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Vian2g02437 216 Gene3D - 48 119 - -
Vian2g02437 216 SMART HOX_1 53 115 IPR001356 GO:0003677
Vian2g02437 216 Coils Coil 117 144 - -
Vian2g02437 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02437 Vian-Chr2 44866944 44868509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02437 5 155 Homeobox Transcription Factor Family AT2G36610 43.750 3.27e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian2g02437 Homeodomain 7.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02437 - - vra:106757543 415.231