Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02436 ATGAAACACCCTTCTTCCATAAACCTGTCACTGCCATTGTTGCCATTGGCATTGGCCTTCACCATCTTCTGTGTTGCAGAGAGTGCATGGCAAAATGATACACTCGCCCTTACCCAGTTCCGCCTCCAAACCGACACCCACGGCAACCTTCTCTCCAACTGGACCGGAGCCGACGCCTGCTCCGCCGCGTGGCTCGGCGTCGAGTGCTCCCCAAACGGCAGAGTGGTGGGCCTCTCCCTCCCTTCCCTCAACCTCCGTGGTCCAATTGATTCTCTCTCCTCACTAGTGTACCTCCGCTTCCTCGACCTCCACGAAAACCGCTTAAACGGTACCTTTTACCCCCTCTTAAACTGCACCGCCCTCGAACTCCTCTATCTCTCCCACAATGACTTCTCCGGCGAGATTCCGCGGCAGATATCCTCCCTCCGCCTCCTTCTCCGCCTTGACATCTCCGACAACAACATCCGCGGTCCAATCCCCAACCAAGTCGCCAAACTAACCCACCTTCTCACTCTTCGGTTGCAGAACAACGCCCTGTCCGGCCACGTCCCCGACATCTCCGCTTCCCTCCTCAACCTCACCCAACTCAACGTAACCAACAATGAACTTCGTGGCCACGTTCCCGATTCTATGCTTTCAAAATTCGGCAACACCAGCTTCTCCGGAAACCATGGTCTATGTGGGTCCACCCCGTTGCCCAAATGTTCCGAAATCGAACCAGACACGGAGACCACAATAACCGTTCCTTCAAAACCGAGTTCGTTCCCTCAAACAAGCAGTGTGACTCTCTCTGACACTCCGAAGAAGAAAGGTCTGAGGGCGGGTGTCATTGTGGCCATTGTAGTGGCAGTTTGCGTGGCGGTGCTCGTGGCGATTTCATTTGTGGTGGCGCACTGCTGCTCGAGGGGAGGGGGAGGCTATGGATCGGCAGCGGGGAGCGAGAGTGGGAAACGGAAGAGTGGGAGTAGTTCTGGGAGCGAGAAGAAGGTGTATGGAAATGGTGGGAATTTCGATAGAGATAGCGATGGGACGAACACTGAGACGGAACGAAGCAAGCTGGTGTTTTTCGATAGGAGGAACCAGTTTGAGTTGGAGGATCTGCTTCGAGCATCGGCGGAGATGCTGGGAAAAGGGTGCTTGGGAACGGTTTACAGAGCGGTGCTCGACGATGGCTGCACCGTCGCAGTGAAGAGACTGAAAGACGCAAACCCCTGCGAGAGAAACGAGTTTGAACAGTACATGGACGTTGTAGGGAAGCTCAAACACCCCAACATTGTCAGACTCCGAGCCTATTACTATGCAAAGGAAGAAAAGCTTCTTGTGTATGATTATCTCCCTAATGGAAGCTTGCATGCTCTTCTTCATGGTAACCGTGGACCTGGAAGGATTCCATTGGATTGGACAACGAGAATAAGCTTGGTGTTAGGTGCGGCCAGAGGGTTGGCTAGGATTCATGCAGAGTACAACGCATCCAAGATACCCCACGGGAACGTCAAATCCTCCAACGTGCTTCTCGACAAAAACGGCGTCGCTTTGATCTCCGACTTCGGGTTATCGCTGCTGTTGAACCCGGTTCACGCGATCGCGCGGTTGGGAGGGTATAGAGCGCCGGAACAGGTTGAAGTGAAGAGGCTGTCGCAGGAGGCTGACGTGTACGCTTTCGGGGTGTTGGTATTGGAGGTGTTGACTGGAAGGGCGCCGTCCACTGAGTACCCTAGTTCCGCGGCGCGTCCACGCGTGGAGGATGAGGGTGAGGTGGATCTTCCGAAGTGGGTTCGGTCGGTGGTGAAGGAGGAATGGACCGCTGAGGTGTTCGACGAGGAGTTGTTGCGGTACAAGAACATCGAGGAGGAGTTGGTGGCGATGTTGCACGTGGGAGTGGCGTGCGTGGCGGCGCAACCGGAGAAGAGGCCGAGTATGATGGAGGTTGTGAAGATGGTTGAGGATCTGAGGGTGGAACAGTCTCCTCTGGGAGAGGATTATGATGAGGCACGGTCACGCAATTCGCTTTCGCCAGCTCTTACCAAGTATTGA 2034 0.5487 MKHPSSINLSLPLLPLALAFTIFCVAESAWQNDTLALTQFRLQTDTHGNLLSNWTGADACSAAWLGVECSPNGRVVGLSLPSLNLRGPIDSLSSLVYLRFLDLHENRLNGTFYPLLNCTALELLYLSHNDFSGEIPRQISSLRLLLRLDISDNNIRGPIPNQVAKLTHLLTLRLQNNALSGHVPDISASLLNLTQLNVTNNELRGHVPDSMLSKFGNTSFSGNHGLCGSTPLPKCSEIEPDTETTITVPSKPSSFPQTSSVTLSDTPKKKGLRAGVIVAIVVAVCVAVLVAISFVVAHCCSRGGGGYGSAAGSESGKRKSGSSSGSEKKVYGNGGNFDRDSDGTNTETERSKLVFFDRRNQFELEDLLRASAEMLGKGCLGTVYRAVLDDGCTVAVKRLKDANPCERNEFEQYMDVVGKLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNASKIPHGNVKSSNVLLDKNGVALISDFGLSLLLNPVHAIARLGGYRAPEQVEVKRLSQEADVYAFGVLVLEVLTGRAPSTEYPSSAARPRVEDEGEVDLPKWVRSVVKEEWTAEVFDEELLRYKNIEEELVAMLHVGVACVAAQPEKRPSMMEVVKMVEDLRVEQSPLGEDYDEARSRNSLSPALTKY 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02436 677 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Vian2g02436 677 ProSiteProfiles Protein kinase domain profile. 369 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02436 677 FunFam pollen receptor-like kinase 1 339 444 - -
Vian2g02436 677 MobiDBLite consensus disorder prediction 244 267 - -
Vian2g02436 677 MobiDBLite consensus disorder prediction 315 330 - -
Vian2g02436 677 SUPERFAMILY Protein kinase-like (PK-like) 373 647 IPR011009 -
Vian2g02436 677 Pfam Protein kinase domain 373 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02436 677 MobiDBLite consensus disorder prediction 244 266 - -
Vian2g02436 677 Gene3D Transferase(Phosphotransferase) domain 1 445 668 - -
Vian2g02436 677 Gene3D Ribonuclease Inhibitor 26 117 IPR032675 -
Vian2g02436 677 SUPERFAMILY L domain-like 31 213 - -
Vian2g02436 677 CDD STKc_IRAK 375 650 - -
Vian2g02436 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 445 659 - -
Vian2g02436 677 FunFam Nuclear pore complex protein NUP107 30 185 - -
Vian2g02436 677 MobiDBLite consensus disorder prediction 658 677 - -
Vian2g02436 677 Gene3D Ribonuclease Inhibitor 118 237 IPR032675 -
Vian2g02436 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 652 IPR046959 -
Vian2g02436 677 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Vian2g02436 677 MobiDBLite consensus disorder prediction 305 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02436 Vian-Chr2 44857171 44860281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02436 31 674 Receptor kinase-like Gene Family AT2G36570 66.515 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian2g02436 Pkinase 4.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02436 - - gmx:100808402 1092.8