Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02434 ATGGTTTCCTATACTTCTCACCATGACACTGACACACATCAGCAACACCCACCACAATCAATCAAACATGGCTACAACTATTCCATGGGAAAAACCAACAAGTTGCAAATCACACTCAGTGATGAAGATGAGCCTGTGTTCACAGCAGAAGACTCCGGTGATCCCAAGAGAAAAATGTCTCCATGGCATAGAATGAAGTGGACTGACACCATGGTAAGGCTCTTAATAATGGCTGTTTATTACGTTGGAGACGAGACTGGTTCAGAAGGCGTTGATCCCACTAAGAAGAAAGCCACGGGGTTGTTGCAGAAGAAAGGAAAATGGAAATCGGTGTCAAGGGGCATGATGGAAAAGGGGTACTATGTATCTCCCCAACAATGCGAAGACAAATTCAATGACTTGAACAAGAGGTACAAGAGGGTCAACGACATTCTGGGCAAGGGCACAGCTTGTCGGGTGGTGGAGAACCAAACATTGTTGGACACCATGGATCTGTCCCCAAAAATGAAGGAGGAAGTTCGAAAACTGCTCAACTCCAAGCACTTGTTCTTCAGGGAAATGTGTACCTATCACAATAGTTGTGGCCACAACAACAACTGTGGCACTTCGAACGTGCAACAATCAAGTGAGGCTCAACCACAACATCAACATCAACATCAACAGCAGCGGTGTTTGCATTCATCGGAGAACGGGGTGGGGGGTCTGAGAATGTTGAAAGAGGATGAGGAGGAGGATAATGAGGAAGAGGATTCGGAGGATTTTTCTGATGAGGAGGAAGAGGAATCGGGAGAAGGAGCATCAAGGGGTATGGAGGATGATGAGAATGATGTGATGAGGAAGAGAGCGAGGAAAGGAGGGTTTGGTGGGTTGTCATCATCATCATCGATATCATCTCAGGCGATGATGCAGCAATTGAATGGCGAAGTGAGCGGTGTGTTGCAAGATGTGGGGAAGAGTGCATGGGAGAAAAAACATTGGATGAAGAAGAGGGTGGTGCAGTTGGAGGAGCAGCAGGTGAGTTATCAAATGCAGGCGTTTGAATTGGAAAAGCAACGGATGAAGTGGGCCAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGATAAGCTTCAGAATCAACGGAGGAGGCTGGAAATAGAGAGAATGGTCTTGCTAATTCGCCAGAAGGAGCTTGAATTGGTTAATGTTCATCAACAGCAGCAGCATCAACAGCAGCATTCTTCTACCTAG 1233 0.4655 MVSYTSHHDTDTHQQHPPQSIKHGYNYSMGKTNKLQITLSDEDEPVFTAEDSGDPKRKMSPWHRMKWTDTMVRLLIMAVYYVGDETGSEGVDPTKKKATGLLQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQTLLDTMDLSPKMKEEVRKLLNSKHLFFREMCTYHNSCGHNNNCGTSNVQQSSEAQPQHQHQHQQQRCLHSSENGVGGLRMLKEDEEEDNEEEDSEDFSDEEEEESGEGASRGMEDDENDVMRKRARKGGFGGLSSSSSISSQAMMQQLNGEVSGVLQDVGKSAWEKKHWMKKRVVQLEEQQVSYQMQAFELEKQRMKWARFSSKKEREMERDKLQNQRRRLEIERMVLLIRQKELELVNVHQQQQHQQQHSST 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02434 410 MobiDBLite consensus disorder prediction 203 275 - -
Vian2g02434 410 Gene3D - 67 140 - -
Vian2g02434 410 MobiDBLite consensus disorder prediction 1 27 - -
Vian2g02434 410 Pfam Myb/SANT-like DNA-binding domain 64 188 IPR044822 -
Vian2g02434 410 MobiDBLite consensus disorder prediction 39 59 - -
Vian2g02434 410 MobiDBLite consensus disorder prediction 241 267 - -
Vian2g02434 410 Coils Coil 361 388 - -
Vian2g02434 410 PANTHER F16F4.11 PROTEIN-RELATED 10 397 - -
Vian2g02434 410 MobiDBLite consensus disorder prediction 203 228 - -
Vian2g02434 410 Coils Coil 331 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02434 Vian-Chr2 44839010 44840242 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian2g02434 Myb_DNA-bind_4 1.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02434 - - gmx:100808934 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02434 2 44839010 44840242 Vian2g02434 2 44839010 44840242 ECH
Vian2g02434 2 44839010 44840242 Vian3g02151 3 30918952 30920355 PCT