Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02422 ATGGGATTTGAACAGGACACAGTTCTGGTACCTCCTTGGCTGGAACAACTTCTTCACACACCTTTCTTCAATATTTGTCGAATTCACGCAGACGCAGCCAGGAGTGAATGTAACATGTTTTGTTTAGATTGCAATGGCGAAGCCTTCTGTTTTTATTGCCGTTCTTCTCGACACAAAGATCATCGAGTCATTCAGATAAGAAGATCTTCGTATCATGATGTAGTGAGGGTGGCTGAAATTGAGAGGGTGTTGGACATAAGTGGAGTGCAGACATATGTGATAAACAGTGCTCGAGTTTTGTTCTTGAATGTGAGGCCACAACCAAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGGAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGAAATGAAGAATTGACAATGGAGACTACCACCACTACCACTACATCAACTTCAAGAGGATCAGTCTCATCAAATCAGCAAGAAGAAGGATTGCGTGAAGGTTCAACACAAGACATGTATCAAGTCACACCTCCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGGGCACCCTTTGCCTCCTAA 648 0.429 MGFEQDTVLVPPWLEQLLHTPFFNICRIHADAARSECNMFCLDCNGEAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVAEIERVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFALDGRNEELTMETTTTTTTSTSRGSVSSNQQEEGLREGSTQDMYQVTPPSNARRRKGIPHRAPFAS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02422 215 MobiDBLite consensus disorder prediction 155 215 - -
Vian2g02422 215 Pfam PLATZ transcription factor 67 138 IPR006734 -
Vian2g02422 215 SUPERFAMILY B-box zinc-binding domain 20 67 - -
Vian2g02422 215 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 213 - -
Vian2g02422 215 MobiDBLite consensus disorder prediction 157 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02422 Vian-Chr2 44705095 44706235 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vian2g02422 PLATZ 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02422 - - gmx:100803076 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02422 2 44705095 44706235 Vian2g02422 2 44705095 44706235 ECH
Vian2g02422 2 44705095 44706235 Vian3g02170 3 31417201 31418496 PCT