Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02420 ATGATGGGATTCAACAGAAACTTCTTCTGGCTTTCTGCCTTTGTCATTTTTCTCTTTTCTGTCTCCTTTATTTTCTATTGCACTTCACCTTCCCCCATCGATTACACAGCCATTAGTCCTCACGATAGTTTCAGTTTCCAGCTTGGTATATTTAGTGGCGCTCAAGACTTGGTATCTCTGATAACAAGTATAGCTAGGAGGAGACACCATCACCACCATCATCATCATAAGGAAAAATGTGAAGGGGCCAAGTGGGATTCCAGGCTTATTCAAGACTATAACGTGAGTCTTGTTTTCACGGTTGATTTAAAGGGCTGTGCTAACTTCAGTAGCGTTCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACCCTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGCTGTGCAAGCCAATAAAACAAACTTAATAATTCAAGGTCAAGGATATCTGAATACAATCATAGAATGGAACGACACCGCCAATTCCACTGGCGGTACTTCCTACAGCTACTCCTTTGCCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGCGGTGGGGGCACAAGCAGTGGCACTGAGAGTCACCGGTGATCAAGCAGCCTTCTATGGATGTGGATTTTATGGTGCACAGGATACACTGAATGATGATGGTGGAAGACATTATTTCAAAGAATGCTTAATCCAAGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTAGCATAAACTGTGTAGCAAAAGCAGAGAAGGATGAGATTAGTGGGTCGATCACTGCTCAAGGGAGGCAATCGATGGATGAAGAAAGTGGGTTTTCCTTTGTGAATTGTAGCATCGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGACCCTATGCCACTGTCATCTTCTCGACAACATACATGTCTGATGTCGTAGCACCTGAAGGATGGAATGATTGGAGAGATCCCTCTAGAGACCGGAGCGTCTTCTTTGGGGAGTACAGTTGCCATGGAGCTGGAGCAAATTATGCATCCAGAGTCTCTTATGCCAAGCAACTCAGGGATTACGAAGCAAACTCTTACATGGACATTTCCTACATTGATGGAAATGATTGGCTTCTTAATTATCGTCATAGTTATGTTAATCCTTCGTATATCTAA 1221 0.4324 MMGFNRNFFWLSAFVIFLFSVSFIFYCTSPSPIDYTAISPHDSFSFQLGIFSGAQDLVSLITSIARRRHHHHHHHHKEKCEGAKWDSRLIQDYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVAVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTSYSYSFAIFASKFTAYNISFKNTAPPPSPGAVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECLIQGSIDFIFGNGRSLYEDCSINCVAKAEKDEISGSITAQGRQSMDEESGFSFVNCSIVGSGRVWLGRAWGPYATVIFSTTYMSDVVAPEGWNDWRDPSRDRSVFFGEYSCHGAGANYASRVSYAKQLRDYEANSYMDISYIDGNDWLLNYRHSYVNPSYI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02420 406 Gene3D - 93 402 IPR012334 -
Vian2g02420 406 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Vian2g02420 406 SUPERFAMILY Pectin lyase-like 96 395 IPR011050 -
Vian2g02420 406 FunFam Pectinesterase 93 398 - -
Vian2g02420 406 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 89 393 - -
Vian2g02420 406 Pfam Pectinesterase 101 390 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02420 Vian-Chr2 44670592 44673744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02420 92 393 Carbohydrate Esterase AT1G05310 54.098 1.54e-118 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02420 - - vun:114181275 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02420 2 44670592 44673744 Vian3g01567 3 17150258 17155349 PCT