Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02404 ATGGCTTTCCCCTGGGGAGCCCTCCTAACCACAACATTGCTCTTTCTTGTTGCATTCTCACTTCCTAATGTCCATGCTGAAAACAACACCAACATATATAACAAGAAAGGTGAATTAAGAAAGCATCGACCAGCTTTTGCGCCTACTGGATGGAAGAAAGCTCAAGCTACCTTCTACGATGGAGACTCTAAATCATTTGGTGGAGCTTGTGGGTACGATGATGTGGTTAAGGATGGCTACGGCCTAGACACGATAGCAGTGAGTTCAGTTTTGTTTAAGGATGGTCAGTCATGTGGGTCATGTTACGAGATCAAATGCACAGATTCTAGTAAGGGATGTAAGACGAAATCCCCTCTTTTGGTGACGGCAACAAACGCTTGCCATGGGTGCACACCCGAACACTTAGATTTGGCCAAACCTGCATTTCTCAAAATTGCAGAGCAGAAGGCTGGCGCAGTCCCAATCCTTTTTCGCAGGGTAGCGTGCAAGAAGAAGGGAGGGATTCGATTCACAATCACTGGGAATCCTCATTTTAATCTAGTATCAGTGGGGAATGTCGGAGGAGCTGGGGACGTCAATCAAGTGCAGGTGAAGGGTGACAAGAAAATCAAGCATTGGACAAATTTGAAGCGAAATTGGGGTCAAAAATGGCAAACTGATGTCATGTTACAGGGAGAGACATTGTCTTTTAAGGTCAGAACTGGTGATGGCAGGCACTCTATCTCTCCCAAGATTGCTCCCAGTGATTGGAAATTTGGTCAAACGTTTGAAGGCAAGAACTTCAATTAG 789 0.4537 MAFPWGALLTTTLLFLVAFSLPNVHAENNTNIYNKKGELRKHRPAFAPTGWKKAQATFYDGDSKSFGGACGYDDVVKDGYGLDTIAVSSVLFKDGQSCGSCYEIKCTDSSKGCKTKSPLLVTATNACHGCTPEHLDLAKPAFLKIAEQKAGAVPILFRRVACKKKGGIRFTITGNPHFNLVSVGNVGGAGDVNQVQVKGDKKIKHWTNLKRNWGQKWQTDVMLQGETLSFKVRTGDGRHSISPKIAPSDWKFGQTFEGKNFN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02404 262 Gene3D - 164 261 IPR036749 -
Vian2g02404 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Vian2g02404 262 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Vian2g02404 262 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vian2g02404 262 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Vian2g02404 262 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Vian2g02404 262 PANTHER EXPANSIN-A15 23 261 IPR002963 GO:0009664
Vian2g02404 262 SUPERFAMILY PHL pollen allergen 164 258 IPR036749 -
Vian2g02404 262 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Vian2g02404 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Vian2g02404 262 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Vian2g02404 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Vian2g02404 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Vian2g02404 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Vian2g02404 262 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Vian2g02404 262 Gene3D - 36 163 IPR036908 -
Vian2g02404 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 258 IPR007117 -
Vian2g02404 262 Pfam Lytic transglycolase 85 156 IPR009009 -
Vian2g02404 262 Pfam Expansin C-terminal domain 168 247 IPR007117 -
Vian2g02404 262 SUPERFAMILY Barwin-like endoglucanases 50 184 IPR036908 -
Vian2g02404 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 167 IPR007112 -
Vian2g02404 262 SMART dpbb_1 84 157 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02404 Vian-Chr2 44500893 44501811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02404 45 261 Expansin Gene Family AT3G55500 51.931 5.76e-78 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02404 - - var:108322385 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02404 2 44500893 44501811 Vian2g02404 2 44500893 44501811 ECH