Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02403 ATGGCTTTCCTCTCGGGAGCCATCCTAACCACAACATTGCTCTTTCTTGTTGCATTCTCACTTCCTAATGTCCATGCTGCTGGCAAAAGCACTAACAAATATAACAAGAAAGGTGGAGCTTGTGGGTACGATGATGTGGTTAAGGATGGCTATGGCCTAGACACGACAGCATTGAGTTCAGTTTTGTTCAAGGATGGACAGACATGTGGTGCATGTTACGAGATCAAATGTGTAAATTCTCGTGCGGGATGTAAGGCAGGGAAATCCTCTATTTTTGTGACGGGAACCAACCTTTGCCCTCCAAACTACGATATACCAGGTGATGATGGAGGATGGTGCAACCCACCACGCGAACACTTTGATTTGGCCAAACCTGCATATCTCAAAATTGCAGAGTATAAGGCTGGCATAGTCCCAATCAATTATCGCAGGGTACCATGCAAGAAGAAAGGAGGAATTCGGTTCACTATTACTGGGAATCCTTATTTTAATTTGGTATCAGTGTGGAATGTTGGAGGAGCTGGAGACATCACAGAAGTGCAGGTAAAGGGTAACAAGAAAATCAAGCATTGGACAAATTTGAAGCGAAATTGGGGTCAAAAATGGCAAAGTGATGTCATGTTAGTGGGAGAGGCATTGTCTTTCAGAGTGAGAAGCAGTGATCTCAGGTACTCTACCTCTCGCTGGATAGCTCCCAGTAATTGGAAATTTGGTCAGACTTTTGTTGGCAAGAACTTCGCTTAG 744 0.4422 MAFLSGAILTTTLLFLVAFSLPNVHAAGKSTNKYNKKGGACGYDDVVKDGYGLDTTALSSVLFKDGQTCGACYEIKCVNSRAGCKAGKSSIFVTGTNLCPPNYDIPGDDGGWCNPPREHFDLAKPAYLKIAEYKAGIVPINYRRVPCKKKGGIRFTITGNPYFNLVSVWNVGGAGDITEVQVKGNKKIKHWTNLKRNWGQKWQSDVMLVGEALSFRVRSSDLRYSTSRWIAPSNWKFGQTFVGKNFA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02403 247 Gene3D - 150 246 IPR036749 -
Vian2g02403 247 CDD DPBB_EXPA_N 38 147 - -
Vian2g02403 247 PANTHER EXPANSIN-A15 34 246 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 50 64 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 77 88 IPR002963 GO:0009664
Vian2g02403 247 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Vian2g02403 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Vian2g02403 247 SUPERFAMILY PHL pollen allergen 149 242 IPR036749 -
Vian2g02403 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 152 IPR007112 -
Vian2g02403 247 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Vian2g02403 247 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Vian2g02403 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Vian2g02403 247 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vian2g02403 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Vian2g02403 247 Pfam Lytic transglycolase 56 142 IPR009009 -
Vian2g02403 247 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Vian2g02403 247 Gene3D - 24 148 IPR036908 -
Vian2g02403 247 SUPERFAMILY Barwin-like endoglucanases 14 170 IPR036908 -
Vian2g02403 247 SMART dpbb_1 55 142 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02403 Vian-Chr2 44496826 44497944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02403 1 246 Expansin Gene Family AT2G39700 54.864 8.13e-101 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02403 - - gmx:100800424 383.259