Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02399 ATGCAAATGCAAGAGGAACACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAGAGGCTTCCGTCCCCACTTAGGTTAACCATGTCAACATGTTCCACCGCAGACAACTCCGCAGCTTTTGAGCCTCCGACAACCTCAAATGAATTAAGGAACGAAGAGGATGAAGACTTGGCCAATTGTTTGATTCTCTTGGCTCGAGGCCATAGCACTCCAAAACCCTCACACGGCAAAGAATCCGGGCTATATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTCGGTGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTGGTGCAGAAGAAAAGCAAGTTACTACTTTTGGGGATAATATTAGTAAAAATAATCATGATGATTATTGTCTCACCTTACAATTATCAACGGTTTTGTATAATAGTAGCAACAGCACTAGGAGTAGCACCGTTAATGCTAAATCTAAGGTTCATGAGTGTTCCATATGTGGGGCAGAGTTCTCGTCTGGGCAAGCCTTGGGAGGGCACATGAGAAGGCACAGAAATTTTCTGAGTTCACCTTCGAGTGGGGCAATTGCATATGCTGGTGATAGAATCCCCGAAATTCCAGAAATCAAGAAACAGAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCACCACAGAGAATCCAACTTGCTTCCTTTTCAGTCCAAAGAAAAAGTCATTGTATTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA 780 0.4449 MQMQEEHMQIIKGKRTKRQRLPSPLRLTMSTCSTADNSAAFEPPTTSNELRNEEDEDLANCLILLARGHSTPKPSHGKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKAGAEEKQVTTFGDNISKNNHDDYCLTLQLSTVLYNSSNSTRSSTVNAKSKVHECSICGAEFSSGQALGGHMRRHRNFLSSPSSGAIAYAGDRIPEIPEIKKQKDVLNLDLNLPAPEDDHHRESNLLPFQSKEKVIVFSATSLVDCHY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02399 259 SMART c2h2final6 85 107 IPR013087 -
Vian2g02399 259 SMART c2h2final6 164 186 IPR013087 -
Vian2g02399 259 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Vian2g02399 259 PANTHER ZINC FINGER PROTEIN ZAT5 20 236 - -
Vian2g02399 259 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vian2g02399 259 Pfam C2H2-type zinc finger 163 187 - -
Vian2g02399 259 Pfam C2H2-type zinc finger 84 108 - -
Vian2g02399 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Vian2g02399 259 SUPERFAMILY beta-beta-alpha zinc fingers 84 186 IPR036236 -
Vian2g02399 259 Gene3D Classic Zinc Finger 83 186 - -
Vian2g02399 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 186 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02399 Vian-Chr2 44458059 44458838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02399 6 259 C2H2 Transcription Factor Family AT2G28200 42.424 4.98e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g02399 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02399 - - var:108322426 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02399 2 44458059 44458838 Vian2g02399 2 44458059 44458838 ECH
Vian3g02061 3 26537766 26538524 Vian2g02399 2 44458059 44458838 ECH
Vian11g00525 11 5233571 5234488 Vian2g02399 2 44458059 44458838 ECH
Vian2g02399 2 44458059 44458838 Vian11g00525 11 5233571 5234488 ECH
Vian2g02399 2 44458059 44458838 Vian3g02061 3 26537766 26538524 PCT