Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02398 ATGCCGATCAGAAACATCGCCATCGGAAGGCCCGAGGAGGCCACTCACCCCGACACGTTGAAGGCGGCTTTGGCCGAGTTCATCTCCACCCTCATCTTCGTGTTCGCCGGCTCAGGCTCCGGCATCGCCTACAACAAGCTCACTGACAACGGCGCCGCCACACCTGCCGGACTCATCTCCGCCTCCATCGCCCACGCATTCGGCCTTTTTGTCGCCGTCTCCGTCGGCGCTAACATCTCCGGAGGTCACGTGAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGAGGCAACATCACCTTCCTCCGCGGTATCGTCTACATCATCGCCCAGCTCCTGGGCTCCGTGGTGGCCTCCCTCCTCCTGGCCTTCGTGACCTCCTCCACTGTTCCCGCATTTGGACTCTCAGCTGGAGTTGGAGTTGGTAACGCTTTGGTGTTGGAGATCGTGATGACTTTCGGTTTGGTGTACACTGTCTACGCTACCGCCGTTGACCCCAAGAGGGGTACTTTGGGAACCATCGCTCCCATCGCCATTGGTTTCATCGTTGGCGCTAACATTTTGTTGGGTGGGGCCTTCTCAGGAGCAGCCATGAACCCTGCCATGGGTGTTGGTGGAGGTAAATTGATGGGAATATGGATTTTGCGCACCAATGATGAGATGGCCAAACAGCACAGCACGTGA 681 0.5859 MPIRNIAIGRPEEATHPDTLKAALAEFISTLIFVFAGSGSGIAYNKLTDNGAATPAGLISASIAHAFGLFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRGIVYIIAQLLGSVVASLLLAFVTSSTVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYATAVDPKRGTLGTIAPIAIGFIVGANILLGGAFSGAAMNPAMGVGGGKLMGIWILRTNDEMAKQHST 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02398 226 Pfam Major intrinsic protein 14 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g02398 226 SUPERFAMILY Aquaporin-like 12 204 IPR023271 -
Vian2g02398 226 PANTHER AQUAPORIN-8 6 204 IPR034294 -
Vian2g02398 226 Gene3D Glycerol uptake facilitator protein. 4 215 IPR023271 -
Vian2g02398 226 FunFam Probable aquaporin TIP1-1 4 215 - -
Vian2g02398 226 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g02398 226 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g02398 226 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g02398 226 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g02398 226 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g02398 226 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02398 Vian-Chr2 44438389 44440445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02398 1 212 Major Intrinsic Protein MIP AT2G36830 79.812 2.15e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02398 K09873 - gmx:100527509 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02398 2 44438389 44440445 Vian2g02398 2 44438389 44440445 ECH