Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02370 ATGAAGTGTTTTACATTCTCCTATGGAGAGAAAAAAGAAGAGCCAAAAGGCTTGCCGTCAACATCGGGCCGGTCAGAGAATTCCATGTATAGTGATATTAGAAGATCTGGTTCTGAGTTAAATTCTCAGGAAGTTTCAGACAATGGCAGCACAGAATCTCTCAGGAGGAATGCAATATCCAGTTTGTCCCAGAGGTCCAGCAACCTCAGAGTGTTTACTGTTTCTGAACTGAAATCAGCCACAAGGAATTTCAGTCGCTCTGTTATGATCGGAGAGGGCGGCTTTGGGTGTGTCTACCTGGGATTGATTAAAAGTGTGGAGGTCCCCTCTGGAAGAATTGAAGTTGCTGTTAAACAGCTTAGTAAAAGGGGAATGCAGGGGCACAGGGAATGGGTGACAGAAGTGAATGTTCTGGGTGTTGTTGAGCATCCGAATCTTGTGAAACTAGTGGGTTATTGTGCAGAAGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCTAACAGAAGTGTGGAACACCATTTATCCCATCGATCAGAGGCTCCTCTCTCATGGAGTAGGAGATTGAAAATAGCACGAGATGCAGCTCGTGTATTAACATACCTGCATGAAGAAATGGGTTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAATGGAATGCAAAGCTCTCAGACTTTGGGTTGGCAAGGTTGGGACCATCGGATGGACTGACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCATCTCCAGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGACGTGTGGAGCTACGGTGTCTTCCTTTATGAACTCATCACCGGTAGGCGCCCTATAGATCGAAATCGCCCCAGGGGTGAGCAGAAGCTCTTGGAATGGATAAGGCCATACCTATCAGATGGGAGAAAATTTCAACTAATATTAGACCCAAGACTAGATAAGAAACAAATCTTCAAATCAGCCCATAGACTCTCTATGATAGCAAACCGATGCTTGGTAAAAAATCCAAAGAATCGCCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGGATGTTAGAATCTTCCTCATCCCGTTCCAGTCCACCATTGCCCTTGAGGAGTGTGGCAAGAGTGGAAACTTCCCAGGATACTGAAACAAATAACAAGAAACGGACCATGGATCAGAAGCCTGGAGAAAGTAATTGGTTTGCTAGGATGTGGAGACCAAAGCTTGTTAGAACATGTTGA 1278 0.4366 MKCFTFSYGEKKEEPKGLPSTSGRSENSMYSDIRRSGSELNSQEVSDNGSTESLRRNAISSLSQRSSNLRVFTVSELKSATRNFSRSVMIGEGGFGCVYLGLIKSVEVPSGRIEVAVKQLSKRGMQGHREWVTEVNVLGVVEHPNLVKLVGYCAEDDERGIQRLLIYEYMPNRSVEHHLSHRSEAPLSWSRRLKIARDAARVLTYLHEEMGFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYASPEYVQTGRLTSKNDVWSYGVFLYELITGRRPIDRNRPRGEQKLLEWIRPYLSDGRKFQLILDPRLDKKQIFKSAHRLSMIANRCLVKNPKNRPKMSEVLEMVNGMLESSSSRSSPPLPLRSVARVETSQDTETNNKKRTMDQKPGESNWFARMWRPKLVRTC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02370 425 SUPERFAMILY Protein kinase-like (PK-like) 60 365 IPR011009 -
Vian2g02370 425 Pfam Protein tyrosine and serine/threonine kinase 89 363 IPR001245 GO:0004672|GO:0006468
Vian2g02370 425 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02370 425 FunFam Serine/threonine-protein kinase BIK1 51 169 - -
Vian2g02370 425 Gene3D Transferase(Phosphotransferase) domain 1 170 379 - -
Vian2g02370 425 MobiDBLite consensus disorder prediction 1 54 - -
Vian2g02370 425 MobiDBLite consensus disorder prediction 1 19 - -
Vian2g02370 425 Gene3D Phosphorylase Kinase; domain 1 44 169 - -
Vian2g02370 425 FunFam Serine/threonine-protein kinase PCRK2 170 379 - -
Vian2g02370 425 ProSitePatterns Protein kinases ATP-binding region signature. 90 118 IPR017441 GO:0005524
Vian2g02370 425 PANTHER OS01G0588500 PROTEIN-RELATED 47 366 - -
Vian2g02370 425 MobiDBLite consensus disorder prediction 369 408 - -
Vian2g02370 425 CDD STKc_IRAK 90 368 - -
Vian2g02370 425 MobiDBLite consensus disorder prediction 20 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02370 Vian-Chr2 44117606 44121269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02370 1 381 Glycoside Hydrolase AT3G07070 40.452 5.60e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian2g02370 PK_Tyr_Ser-Thr 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02370 - - gmx:100813060 752.281