Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02354 ATGGGCAACGTCTCAAGCGGCGGTGCCAACCACCGTCGCCGGCACAGCGGAGCTTTAAGGCGGAGTCATCCGCCGCCTCCACCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTTGTGTACCAGGGTGCCGCACCTTATCCGAACCCTACCCTGCATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGCGCCTCCCATGCCTCATCAGCATCATCATCTACAGCATCAACATCATCATCCACAAAATCAACATCAACACCATCTGCACATGGACCCGGCCTGGATTCCAGGGCGTTACCCTTGTGGACCCGTGATGCCTAACCCTGCACCTTTTGTTGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGAGTCTTAGGCTTGAACCTGATGAGGGAAATTCTTCCCACTTCCTTATCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGGCTCGTTCATTTGAGCTCTCATGGTAGCTTGAGTTTTACGGAGTGTTATGGCAACTATTTTCTTTTACCTTACCAACATCCGATCCTGTGGTTACCCGCTGGGTGGAAGGGGGCAGTTGTCATCGATGGTTATGCCGTCACCATTTATTTCTTTGCAAAAGAAGGTGAAGACTCCATCCTCACACCTGTGAAGGAAAACAATCCTGCTCCAGTGACAGTGAATTTTGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCATCTGGAACTGGTATTGATTTTTCTGTTTTTGAGGAATCCGAGTTACTGAAAGTGGGTGATATGGATGTGTACCCTCTAGCAGTAAAGGCAGATGCTTCCCCTGGTAATCATGATGAGTCGGATAGAACTCCAGCATCTGGTAACACAAACTCACAGATTACCCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAACAGAAGCTGACTTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGTTTGTCGGAGCCTCGGGATACAATTGTTCATCCCTGCCGCCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGTCAAATAGATGCCCAATTTGCAGACAACCAGTGGAGAGGCTTTTGGAGATAAAGGTAGGGTCTGAGGAGTGA 1224 0.4935 MGNVSSGGANHRRRHSGALRRSHPPPPPPVTPQPEIAANPFVYQGAAPYPNPTLHYPQYHYPGYYPPAPPMPHQHHHLQHQHHHPQNQHQHHLHMDPAWIPGRYPCGPVMPNPAPFVEHQKAVTIRNDVNIRKESLRLEPDEGNSSHFLISFSFDATVSGRLVHLSSHGSLSFTECYGNYFLLPYQHPILWLPAGWKGAVVIDGYAVTIYFFAKEGEDSILTPVKENNPAPVTVNFEQGLGQKFRQPSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNHDESDRTPASGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSTEADLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQSNRCPICRQPVERLLEIKVGSEE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02354 407 MobiDBLite consensus disorder prediction 66 90 - -
Vian2g02354 407 MobiDBLite consensus disorder prediction 21 35 - -
Vian2g02354 407 CDD mRING-HC-C3HC5_MGRN1-like 351 392 IPR045195 -
Vian2g02354 407 Pfam Zinc finger, C3HC4 type (RING finger) 351 397 - -
Vian2g02354 407 ProSiteProfiles Zinc finger RING-type profile. 353 392 IPR001841 -
Vian2g02354 407 MobiDBLite consensus disorder prediction 1 36 - -
Vian2g02354 407 SMART ring_2 353 391 IPR001841 -
Vian2g02354 407 MobiDBLite consensus disorder prediction 75 89 - -
Vian2g02354 407 SUPERFAMILY RING/U-box 352 397 - -
Vian2g02354 407 FunFam probable E3 ubiquitin-protein ligase LOG2 337 402 - -
Vian2g02354 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 402 IPR013083 -
Vian2g02354 407 MobiDBLite consensus disorder prediction 277 297 - -
Vian2g02354 407 PANTHER MAHOGUNIN 1 402 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02354 Vian-Chr2 43904403 43908644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02354 35 372 C3H Transcription Factor Family AT3G09770 47.606 9.38e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02354 - - gmx:100807343 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02354 2 43904403 43908644 Vian2g02354 2 43904403 43908644 ECH