Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02348 ATGCAAATGATACCCAGTGACCCCTTTTCTCTGTCCACTACTCTCCCAGGGCTTCCCAATGAACAAAACACAAACCCTAACCCTAATCATCATCCTCCACCCACCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTTTCACCGAAAACTCTCATGGCCACGAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAGACATGTGTCCACCACCACGCCTCCAGGGCTCTCGGAGACCTCACCGGAATAAAAAAGCATTATAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAAAAGTACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGAGAGTATAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTTATTACTCACAGGGCTTTCTGCGATGCCTTAGCCGAAGAGAGCTCGAGACTTTCCTCAGTTACTACCAGTAGTCTAAATTTCAAGAGCGAAGATGCAACTGTGATGAATACACAAGCTGGTTTGTCGTCATGTGGATTAATCACTGGTCAGGGAATGCAGAGTGTTCCACACTTTGGTCCACATGGGTTTCGTTTAATGGGGATGGGTGCAGACCAACAAAGACCAAACTTGTCACTGTGGTTGAATCAGGGACATCACATTAATAACCCACTTGATGTTCCATCATCAAGTTCCTCAGGTTTGCCTGAGGTTGTGCAAATGGCACAAGCTAATAATGCCATGATTGGTTCTTCTTCAGTATTCTCAAATTTTAGAATGCCTGCCTCCAATTCAAAGGGAGAAGGTGGAGCTTCAGATTTGGCAACGATTTATTCTGAGAGTCAAAATAAGAATTCAATCTCAGCTTCCCCAATGTCAGCCACTGCCCTTTTGCAGAAGGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTGATGAGCTCATCTTCCACCCAAAGTACCAGTCTCAATAATAGCAATGCAAACCAAACCGGTGACCAACTTAACCAAGTCTTTCACAACATGAACCAACAGGAAAATTTCAATGGAACAAGCAGTAGTGCAACTATGTTGGGTAGTTCTACTAACTTTAGCTCATTGACACATCCATCAAACAGTTTTGATCAGTTTCTGATGCAAAACAATGTGGAACCAACTCAGATAAACCTCCATCCAGGCTCAAACACAGTGGAACGTAACTTGACAAGAGATTTTCTTGGCGTGAACAGAAATGGAGGTGGACATGCATTTCTACCCCAAGAGCTTGCCAAGTTTGCTTCCTTAGGCTCATCAATGGGTCTGAACCAATTCATTGCAGGCCATCGATGA 1500 0.45 MQMIPSDPFSLSTTLPGLPNEQNTNPNPNHHPPPTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHHASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLSSVTTSSLNFKSEDATVMNTQAGLSSCGLITGQGMQSVPHFGPHGFRLMGMGADQQRPNLSLWLNQGHHINNPLDVPSSSSSGLPEVVQMAQANNAMIGSSSVFSNFRMPASNSKGEGGASDLATIYSESQNKNSISASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTSLNNSNANQTGDQLNQVFHNMNQQENFNGTSSSATMLGSSTNFSSLTHPSNSFDQFLMQNNVEPTQINLHPGSNTVERNLTRDFLGVNRNGGGHAFLPQELAKFASLGSSMGLNQFIAGHR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02348 499 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vian2g02348 499 Gene3D Classic Zinc Finger 127 203 - -
Vian2g02348 499 Gene3D Classic Zinc Finger 43 118 - -
Vian2g02348 499 MobiDBLite consensus disorder prediction 1 50 - -
Vian2g02348 499 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Vian2g02348 499 SMART c2h2final6 65 87 IPR013087 -
Vian2g02348 499 SMART c2h2final6 106 136 IPR013087 -
Vian2g02348 499 SMART c2h2final6 141 161 IPR013087 -
Vian2g02348 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Vian2g02348 499 MobiDBLite consensus disorder prediction 1 25 - -
Vian2g02348 499 FunFam protein indeterminate-domain 12-like 44 112 - -
Vian2g02348 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 472 IPR031140 -
Vian2g02348 499 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Vian2g02348 499 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02348 Vian-Chr2 43843132 43845077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02348 1 486 IDZ Gene Family AT5G03150 47.756 1.74e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g02348 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02348 K25870 - gmx:100789331 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02348 2 43843132 43845077 Vian2g02348 2 43843132 43845077 ECH