Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02347 ATGGACAAAGATGGTAATTCAGAAATCCGACTTCCTCCAGGGTTTAGATTCCACCCTTCTGATGAAGAGCTGATTGTTCATTATCTGAGAAACAAAGTGACATCATCACCCCTTCCTGGCTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCAAAGTAAGGCTTTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCCAGAGACAGGAAGTATCCGAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCTGGTTATTGGAAGGCTACTGGCACTGACAGACCCATTTTTACTTCATGTGGGATGAAGAATATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGTCGAGCACCAAAAGGATCTAAAACTGATTGGATCATGCACGAGTACAGGTTGCACAATTCCATGAATTCCATTTCACAGCAAAGAAGGTCCATGAGACTGGATGAGTGGGTGCTGTGTCGGGTCCGACAGAAAGCAAGCAACACAAGAAGTAATTGGGAAGAGACTATTTATGAAGCAACAAGCCAGTTTGAAGAGATGAATGAGAACTCAAATCCTGAAGCAGCCAAAAATTCTGTGCATGATGAATATCCATTGTTGCCTTATATTCTGGCTTCTGTGTCTGATTCTATTGGCCTAGTCTCAGGCTCAGGCTGTGGTTGTAATGATGATGGAAAAGCATATGCTTCATTGCATGATAAGAACACGAATGTAATAAGTGGAGCAGAGTTTATGGCAGCTGAGGGTTTGTTTAATCCACTGAAGAGGAAAAACACTAAAGAGAAGGAGTTGGAGTTGTATGCTTCCCTCGATAAAAAACTAAGCGAAGAACATGATGTTGGGAATGAGCATGATCTGAACAAAGACTGCAATTCCAATAACTTTGACCACTGGACTTCCATCATACTACCCCAAGAGCTTAATATCTAG 951 0.4217 MDKDGNSEIRLPPGFRFHPSDEELIVHYLRNKVTSSPLPGSFIAEIDLYKYNPWELQSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDRPIFTSCGMKNIGVKKALVFYKGRAPKGSKTDWIMHEYRLHNSMNSISQQRRSMRLDEWVLCRVRQKASNTRSNWEETIYEATSQFEEMNENSNPEAAKNSVHDEYPLLPYILASVSDSIGLVSGSGCGCNDDGKAYASLHDKNTNVISGAEFMAAEGLFNPLKRKNTKEKELELYASLDKKLSEEHDVGNEHDLNKDCNSNNFDHWTSIILPQELNI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02347 316 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Vian2g02347 316 Gene3D NAC domain 20 171 IPR036093 GO:0003677|GO:0006355
Vian2g02347 316 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Vian2g02347 316 FunFam NAC domain-containing protein 72-like 20 170 - -
Vian2g02347 316 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 240 - -
Vian2g02347 316 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02347 Vian-Chr2 43829415 43830612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02347 1 177 NAC Transcription Factor Family AT1G61110 62.632 1.01e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g02347 NAM 1.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02347 - - gmx:100788799 491.5