Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02346 ATGAGTGTCATCGACATTCTCACCAGAGTTGATTCCATCTGTAAAAAGTATGATAAATACGACGTCGAGAAACAAAAGGATTCCAATATCTCCGCTGACGATGCATTCGCAAAACTCTACGCCTCCGTTGATGCCGAAATCGAGACCTTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAAGTAAGGCGTCTACTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAAGTTGTTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTATGAAAAAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGGATTCAAGCTATCCCAGATGGGACCCCTGCAGTACCCAAACAAACGGGAAGTTGGGCAGCTTCTGCCTCACGTCCTGGAATTAAATTTGATTCAGATGGACAATTTGATGATGAATACTTCCATCAAACCGAAGAATCAAGTCGATTTAGGCAGGAGTATGAAATGCGTAAACTGAAACAGGATCAAGGTTTGGATATGATAGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTACCACTGATGGATGAGATTGATGCTAAGGTGGACAAGGCATCTTCCGACCTTAAAAATACCAATGTTAGACTTCGAGACACAGTGAACCAGCTTCGGTCCAGTCGAAACTTCTGCATTGATATTGTTTTATTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAATGTGCTAAAGAAATGA 798 0.4211 MSVIDILTRVDSICKKYDKYDVEKQKDSNISADDAFAKLYASVDAEIETLLQKAETASKEKSKASTVAINAEIRRTKAKLLEEVPKLQRLAMKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAVPKQTGSWAASASRPGIKFDSDGQFDDEYFHQTEESSRFRQEYEMRKLKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLRDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02346 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vian2g02346 265 Gene3D - 170 231 - -
Vian2g02346 265 PANTHER SYNTAXIN 46 252 IPR045242 -
Vian2g02346 265 SMART tSNARE_6 165 232 IPR000727 -
Vian2g02346 265 CDD SNARE_Qc 175 230 - -
Vian2g02346 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian2g02346 265 SUPERFAMILY SNARE fusion complex 164 230 - -
Vian2g02346 265 FunFam Putative syntaxin-71-like 170 231 - -
Vian2g02346 265 Coils Coil 40 60 - -
Vian2g02346 265 Pfam SNARE domain 207 256 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02346 Vian-Chr2 43820696 43827038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02346 1 264 SNARE and Associated Proteins AT3G09740 76.316 1.83e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02346 K08506 - gmx:100804155 470.314