Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02345 ATGGGGCATAGGCATGTATATAACACATCTCCATTGTTTGAGGGTGAGCCTGATCAGAACTGGAATCATATGCACATTGATCAACACTATGTGCACCTTGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCGGACAATATGTCTATAGATAACACTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCACAACATTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATAATGATCATTTTGTGCATTCGTCTAATGCTGGAGCATTCTTTACAGTGTCAGATAATCACGTACACCAACCTTCTTCTTCCAATTATGACAGACATACATTTAATGTTGATAGTAGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGGACTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTACGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGAAGTTCAACTGATCTTCCTATATCTTCGGAATTATGGCAGGATAAGCCAAATATTGATTCTCAATATATGCACTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCTCTACACTTGATTTGGACTCCAACCCATCGAGGACCCATTTATCCACTAATCATTCTCACACTTCCTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCAAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGTCATTTCCTTGTTGGAAGTGGTGCTACTGTTGGCAATGCTTCTGTGGATGTTGGGTGCTTCCATCATGGTACAAGCAGAAATCCTGCTCCTACTCAAAGTTTTCAAAATAATCAAACTCAGAATGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAACTTTTGGGGCTTCTTCAAGCTTGCGCATGGGACATTTGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCAAGTCAAAGATATCGCACATTGACTGAGGAGAGTGGTCTTGCCGAACGATTTGCCTCTGAGGGTTTCTTGGTTATTGAGCGTGCATCGGTGTATGATTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTATGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACAGGACTCTCTGAGGACATGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGATGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAACTTGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTGTGAAGAAATTATGCCCTATCTGCAAAGCTTCTGCATTGGCTGAGGATACAAAGGATAAATAA 1647 0.4208 MGHRHVYNTSPLFEGEPDQNWNHMHIDQHYVHLGRTSTSENGSFIYPADNMSIDNTSFPSHWNSSTRSNGYASSGHNIDVPPHQPDASGTSNNDHFVHSSNAGAFFTVSDNHVHQPSSSNYDRHTFNVDSSFVDLTMGSGQGTHKRKSPGISPVYERGSTSRYFNAGSSTDLPISSELWQDKPNIDSQYMHWDHFTMTPTFRGTGLSIKGEGSLRNVRSRSTLDLDSNPSRTHLSTNHSHTSYPTLPPVDHSSLVDVSGQTSTLTRDWSQMNISPANGRVLLPDTSAFGLETSHFLVGSGATVGNASVDVGCFHHGTSRNPAPTQSFQNNQTQNARGIQSNYSQRSTPTFGASSSLRMGHLTSLDEGLPMVAESYSSRHPRPLSTLGWRNGDRNGRSRISSQRYRTLTEESGLAERFASEGFLVIERASVYDSRNMLDQHREMRMDIDNMSYEDLLALGERIGNVNTGLSEDMFSKCLTETIYCSSEQSQDEGNCVICLEEYKNLDDVGTLKTCGHDYHVSCIKKWLSVKKLCPICKASALAEDTKDK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02345 548 CDD RING-H2_RNF24-like 495 540 - -
Vian2g02345 548 MobiDBLite consensus disorder prediction 214 251 - -
Vian2g02345 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 93 541 IPR045191 GO:0061630
Vian2g02345 548 SUPERFAMILY RING/U-box 485 540 - -
Vian2g02345 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Vian2g02345 548 SMART ring_2 495 536 IPR001841 -
Vian2g02345 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Vian2g02345 548 MobiDBLite consensus disorder prediction 60 91 - -
Vian2g02345 548 MobiDBLite consensus disorder prediction 60 75 - -
Vian2g02345 548 Pfam Ring finger domain 494 537 IPR001841 -
Vian2g02345 548 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 460 541 - -
Vian2g02345 548 MobiDBLite consensus disorder prediction 322 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02345 Vian-Chr2 43802375 43805039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02345 1 547 C3H Transcription Factor Family AT2G37150 41.547 3.15e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02345 - - gmx:100803627 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02345 2 43802375 43805039 Vian2g02345 2 43802375 43805039 ECH