Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02339 ATGGCCAACGACTCTTCGTTTTTGTTTTCTGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGATATCGCCAGATTCCAGAAAAAAGATAACGATACTGATTCGGCGAAGATTTGGAGCGTTGCCGATGACGGAAGGGCGAAAACGAGGGAAGCAGTAGAAGAAAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCTGAAAATGTTGAAGGATTCAATGTGTTTAGAAATTCCGCATCTGTGGCGCAGTCCAGTGGTGAAGTTCAAGCTGATCAGGAGTCTATTGAGTTTAGTAAAAAGAAGAATAAGAAGGAACAAAATCGACAACTCGAGCGGGACGCGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAATTGAAATCAAGATATAAGTGTCCATCGTATTTGTTGCGCAACCTGAAAGAGCTTGGATTCAGAGAACCAACGCCTATTCAAAGGCAGACTATTCCAGTACTTTTAGATGGTCGAGAGTGCTTTGCTTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTATATGTCCAATGCTTATAAAGCTTAAGGACCCAGAAAAGGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAGCTTGCTAAAAGAAAAAAATTTGGTATTAAGTTAATGACTAAAAGTTTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCCACACCACTCCGATTACAATTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTGGAGTACCTTGTCCTGGATGAATCGGATAAGCTTTTTGAGCCCGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTCAATCATTCGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGTTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTGAACAAGAGCGAGGAAATGCTGTCGACAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATACGTCCACAGAATTGGTCGTTCTGGCAGAGCGGGGAGGAGTGGAGAAGCGATTACTTTTTACGCAGAGGAAGACATTCCATTGCTGCGGAATGTTGCTAATCTAATGGCAGCATCGGGCTGTGAAGTTCAGCCCTGGCTCATGGAGTTGCAAAAAAAGAAGTGGAAGAAGCACCGTCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTGTAA 1608 0.4216 MANDSSFLFSGIRFNRKKFGADIARFQKKDNDTDSAKIWSVADDGRAKTREAVEEKTASTKKRKRKGNSSENVEGFNVFRNSASVAQSSGEVQADQESIEFSKKKNKKEQNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYKCPSYLLRNLKELGFREPTPIQRQTIPVLLDGRECFACAPTGSGKTLAFICPMLIKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKSFLRNADFSKFPCDILISTPLRLQLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSEQERGNAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRSGEAITFYAEEDIPLLRNVANLMAASGCEVQPWLMELQKKKWKKHRPKRDSISTKPDL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02339 535 Gene3D - 82 342 IPR027417 -
Vian2g02339 535 SMART ultradead3 161 358 IPR014001 -
Vian2g02339 535 MobiDBLite consensus disorder prediction 87 112 - -
Vian2g02339 535 Gene3D - 343 520 IPR027417 -
Vian2g02339 535 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Vian2g02339 535 Pfam Helicase conserved C-terminal domain 373 476 IPR001650 -
Vian2g02339 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 515 IPR001650 -
Vian2g02339 535 MobiDBLite consensus disorder prediction 45 73 - -
Vian2g02339 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
Vian2g02339 535 MobiDBLite consensus disorder prediction 97 112 - -
Vian2g02339 535 CDD SF2_C_DEAD 355 485 - -
Vian2g02339 535 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 147 522 - -
Vian2g02339 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 488 IPR027417 -
Vian2g02339 535 CDD DEADc_DDX52 153 346 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vian2g02339 535 MobiDBLite consensus disorder prediction 45 70 - -
Vian2g02339 535 SMART helicmild6 395 476 IPR001650 -
Vian2g02339 535 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02339 Vian-Chr2 43760461 43764221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02339 136 496 Eukaryotic Initiation Factors Gene Family AT3G19760 30.854 6.97e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02339 K14779 - gmx:100800969 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02339 2 43760461 43764221 Vian2g02339 2 43760461 43764221 ECH