Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02333 ATGCACGGAACACCAGAAGAAGAGACGGTGCAGAGGATCGGATGCGTATCCGTGGACCCATTCGGGTTAATGGAAGTACTCGACTTTTACTTTCCTGAACAGCTCTTCGCCGTCGAGAAAACCTGGAACAGTCTCGCTTCCTCTCTTTTTTCATTCTTTTCTTCACTGGTGGGACAAAACCTTGTTTCTCAGGTGAAAAGTGGTTATGGAAACAATACCTTGTCGCTTGACTTTCAGCAGTTCCAACAGATTTATCATGATGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATTGCTCTCACATGCATGAATGCTGCCGTACATAAGGTTTTGCTTTCCAACTGGGAGAATCACAATCTGGTGCTTGGTGCAAAGGTTGATGTTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCGCTGGTGGTGCAAATGTTTTTTGAATGCTGTAAATGTAGACAAACAATTTCACGCATATTTCCCGATGGAAAGTATTATCCACCATCAACTTGCAATTTGAACGGCTGCAAGAGCAAAATCTTTAATCCGTTGCGGTCTACTGCTCAAACCATTGATTTCCAAAAAATAAGAGTTCAAGAGTTATTAAAACATGAAGACCATGAAGAAGGACGGGTACCTCGAACAGTGGAATGCGAGCTTAGCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGGATTATAAGAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCCACATCTCAGGATCTGCAGGACTCTAATGCCAAAACTAGGCCAGCTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGCAAAGTTTAAACGGGAACACGGTTCAGATTTATTTCGCCAAATCCTTCAATCTATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGTGTGCGGAAGCATTCTATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCTGCGGCAGCAGTTTCTCCGCGTGGCATCTATGTCTGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGTTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAAGCGATGGAGCAACAGTGTGTATCTATCGCAAAGGCGGGGTTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCCGCTGGTGGTCATTATAATGAAGGAGGTGGATGTGGCCACGAGAACCAAGGGGATCAAAGGGGGCTTGCAGTTCGTGATACACCTGCAGGGGGGAGAGCGCTGCTTGAAGCATTGAAAGACATCGAAGACCATTTTATCAGGGCGTATGATTTTGGAGAAGTGACCAGATTGCTGGAAGCTGATACAATCCAGGAAGAATGGAAGTCATTGGAGGATGATTTGCCACCATCCAAGCCTCCAAACCTGAATCGGAGGACAGTAGCCAGTGGGTTTCACGGTTCCAACCTTGAGGACAAGGTTGTTATGCAACCGGGTGTAATGGTAGGAATGTTAGGGAGTGGAGAGTGTATGAGAGGAGAAGGAAGAGTTAATACAGAGATGACAAAGTCAGCTGCAGAAATTTTGCAAAAGTTTTACCTAAAACTGAGGGATCATAATACTTCGGCTGACGGTACTCCTATAACTGCTAGGCAGCTGGAAAGTCTAGTACGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGGACCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAGTCCCTGTATGATAAATATGTTGATGAGCATGGAATCGTGGATTTTGGTCGAAGTAGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCACTCAATAAGCAATCGGAATTGGAACAGAAGGATTGCTTTTCAGTATCTGAACTATACAGCCTTGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACACTTTCATCGAAAACTTAAACAGTGTTAGTTATCTACTCAAAAAAGGACCAAAGATATACCAGTTATTATCCTCTTCTTATGCACGAAGCCAAGCGTTTAAGACAAGGGGTTAA 2412 0.4308 MHGTPEEETVQRIGCVSVDPFGLMEVLDFYFPEQLFAVEKTWNSLASSLFSFFSSLVGQNLVSQVKSGYGNNTLSLDFQQFQQIYHDEEFYKMLEEKPKIALTCMNAAVHKVLLSNWENHNLVLGAKVDVRLHNCPKTMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVQMFFECCKCRQTISRIFPDGKYYPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELSQDLVDACIPGDVVTVTGIIRGINNYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSTSQDLQDSNAKTRPAELFDLFSFSSKDLEFVAKFKREHGSDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNEGGGCGHENQGDQRGLAVRDTPAGGRALLEALKDIEDHFIRAYDFGEVTRLLEADTIQEEWKSLEDDLPPSKPPNLNRRTVASGFHGSNLEDKVVMQPGVMVGMLGSGECMRGEGRVNTEMTKSAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITDQDATDVVEIMKESLYDKYVDEHGIVDFGRSSGMSQQKEAKRFLNALNKQSELEQKDCFSVSELYSLADRISLKVPDIDTFIENLNSVSYLLKKGPKIYQLLSSSYARSQAFKTRG 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02333 803 Coils Coil 463 483 - -
Vian2g02333 803 Gene3D - 624 711 IPR027417 -
Vian2g02333 803 Gene3D - 326 530 IPR027417 -
Vian2g02333 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 Pfam MCM OB domain 142 270 IPR033762 -
Vian2g02333 803 SMART AAA_5 392 547 IPR003593 GO:0016887
Vian2g02333 803 Pfam MCM AAA-lid domain 631 702 IPR041562 -
Vian2g02333 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 708 IPR027417 -
Vian2g02333 803 CDD MCM8_WHD 724 789 - -
Vian2g02333 803 Pfam MCM P-loop domain 345 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 631 740 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Vian2g02333 803 SMART mcm 138 703 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 SUPERFAMILY Nucleic acid-binding proteins 69 272 IPR012340 -
Vian2g02333 803 ProSiteProfiles MCM family domain profile. 348 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02333 803 FunFam Retrovirus-related Pol polyprotein LINE-1 327 480 - -
Vian2g02333 803 Gene3D - 169 219 - -
Vian2g02333 803 Gene3D - 142 271 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02333 Vian-Chr2 43709765 43722793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02333 18 789 Core DNA Replication Machinery Family AT3G09660 62.643 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02333 K10737 - gmx:100784549 1120.53