Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02331 ATGTACGTAATTATTGGTTCATCAGTTGGGGCTTCTGTTCTACTTTTGGCTACTGTTATATCTTGCCTGTATATGCGCAAAGGCAAGAGAAAATATTATCAGCAAGACCGAGCTGATTCTCTCCCTGCTCAAAGGCTGGCTTCTTGGAAGAACGATGATCCTGCAGAAGCTGCTCACTGCTTCAGTTTTTCTGAAATTGAAAATGCTACAAATAACTTCGAGAAAAAAATTGGTGCCGGTGGTTTTGGAGTTGTCTACTACGGGAAGCTAAAAGATGGAAAAGAGATAGCAGTTAAAGTTTTAACCAGTAATTCCTATCAAGGCAAGCGAGAGTTCTCGAATGAGGTAACTCTTCTTTCAAGAATACACCACAGAAATTTGGTACAGCTGCTTGGTTATTGTCGAGATGAAGAGAATAGTATGCTTGTCTATGAGTTCATGCATAATGGCACTCTCAAAGAACATCTTTATGGTCCATTAGCCAATGGAAGAAGCATCAACTGGATTAAGCGTCTTGAGATTGCTGAAGATGCTGCCAAAGGTATTGAATATCTTCATACGGGTTGTGTTCCTGTCGTTATTCATAGAGACTTAAAAAGCAGCAATATTCTTCTCGACAAGCACATGAAAGCCAAGGTTTCTGATTTCGGTCTTTCAAAACTTGCTGTTGATGGAGTCTCACATGTTTCAAGCATAGTTCGGGGAACAGTAGGATATCTTGATCCTGAGTACTATATTTCCCAACAGCTGACAGACAAGAGTGATGTTTATAGTTTTGGTGTAATTCTCCTTGAACTAATGTCTGGTCAAGAAGCAATATCAAATGAAAGCTTTGGTCTAAATTGCCGAAACATAGTCCAATGGGCAAAATTACACATTGAGAGTGGAGATATACAAGGTATTATTGATCCCTTTTTGCAGAATGATTATGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAGCCTCATGGACATATGCGGCCATCAATTTCAGAAGTTCTAAAGGAGATCCAAGATGCCATATCTATTGAAAGACAGGCAGAAGCATTAAGAGAAGGGAACTCAGATGACATGTCCAAAAATTCTTTTCAGTCTTCCTTGAACATGGGTTCTATGGATCTAGTTGGAGCTGAGAGTTTCTTGTCAATTGATGAATCAGTTGCACAGCCAACAGCAAGATAG 1200 0.395 MYVIIGSSVGASVLLLATVISCLYMRKGKRKYYQQDRADSLPAQRLASWKNDDPAEAAHCFSFSEIENATNNFEKKIGAGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCRDEENSMLVYEFMHNGTLKEHLYGPLANGRSINWIKRLEIAEDAAKGIEYLHTGCVPVVIHRDLKSSNILLDKHMKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQEAISNESFGLNCRNIVQWAKLHIESGDIQGIIDPFLQNDYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAISIERQAEALREGNSDDMSKNSFQSSLNMGSMDLVGAESFLSIDESVAQPTAR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02331 399 FunFam Leucine-rich repeat receptor-like protein kinase 49 146 - -
Vian2g02331 399 Gene3D Transferase(Phosphotransferase) domain 1 147 370 - -
Vian2g02331 399 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02331 399 SUPERFAMILY Protein kinase-like (PK-like) 57 341 IPR011009 -
Vian2g02331 399 CDD STKc_IRAK 77 344 - -
Vian2g02331 399 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Vian2g02331 399 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02331 399 Gene3D Phosphorylase Kinase; domain 1 47 146 - -
Vian2g02331 399 Pfam Protein tyrosine and serine/threonine kinase 73 273 IPR001245 GO:0004672|GO:0006468
Vian2g02331 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vian2g02331 399 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 147 356 - -
Vian2g02331 399 PANTHER OS01G0750732 PROTEIN 4 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02331 Vian-Chr2 43697931 43700442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02331 58 354 Receptor kinase-like Gene Family AT1G67720 57.239 5.12e-118 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vian2g02331 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02331 - - ccaj:109813065 755.747