Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02328 ATGGCGCCCTCAACTCCCTCTAGCGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACCATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAGGATTTTGTTGGTTCAAAGACAGTTATTCAGATTAGAAGTCACGCCCAGAAGTACTTTCTGAAAGTTCAGAAGAACGGGACCGTAGCACATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTGCTCATCCTTACCCACAAAAGGAATCCAAAAATGGTTTACCAGATTTTGCTGAAGTTTATAGCTTCATTGGAAGTATTTTTGATCCAGACACAGAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTGATGAAAAATCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTAGGAAAGCCATGTCATCATACGATGCCAACACGGAATTACGGCAGGAATTGATGTCAAGAAATAGACAAAGGATCTATAATGTCAAACAGCTCAACAAACATTAA 579 0.4197 MAPSTPSSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKESKNGLPDFAEVYSFIGSIFDPDTEGHVQKLKEMDPINFETVLLLMKNLTLNLSSPDFVPVRKAMSSYDANTELRQELMSRNRQRIYNVKQLNKH 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02328 192 Gene3D - 27 74 - -
Vian2g02328 192 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Vian2g02328 192 ProSiteProfiles SANT domain profile. 22 75 IPR017884 -
Vian2g02328 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Vian2g02328 192 PANTHER SWI/SNF COMPLEX-RELATED 108 176 - -
Vian2g02328 192 CDD SANT 26 69 IPR001005 -
Vian2g02328 192 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Vian2g02328 192 Pfam Myb-like DNA-binding domain 24 69 IPR001005 -
Vian2g02328 192 SMART sant 23 71 IPR001005 -
Vian2g02328 192 MobiDBLite consensus disorder prediction 1 25 - -
Vian2g02328 192 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Vian2g02328 192 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02328 Vian-Chr2 43630397 43632307 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian2g02328 Myb_DNA-binding 5.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02328 - - bna:106427884 256.529