Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02281 ATGGCTTCGCGGCGCCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTAGACTGTTCGCAGAAGAATCCGCAATGGGCTTCGGTGTCTTACGGAGTATTTATGTGCTTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGGGTTCACATCTCCTTCGTGCGATCAGTTACCATGGATTCATGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGAGGCAACGACAAACTCAATGCCTTCCTCGCGCAATACGGCATCGCCAAGGAAACCGACATCGTCGCCAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCCGACGGCCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGAGCATCCGCTCCTCCGTCTCCAAGGAGAAGCCGCCCCTTGCCACCGGCAACAACGGCGGCTGGGATAACTGGGACACGGACGAGTTCGGATCGGCTCGGGGCGGCTCTGATCTGCGGCGGAACCAGTCCACTGGCGATGTCAGGGGGTTCGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCGACGGAGGATATGTACACGCGCGCACAGCTGGAAGCCTCTGCTGCCAATAAGGAAGATTTCTTCGCGAGGAAGAGGGCGGAGAATGAGTCGAAACCGGAGGGGCTTCCGCCATCGCAGGGTGGCAAGTACGTCGGGTTCGGATCTAGTCCCGCCCCGAGCCAAAGGGCTAATCAGCAAAGCGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTATCGTTGGTTGCTGCTTCTGCGGCTCAGTCTGCTGCCAATGTTGTTCAGGCCGGGACAAAAGAGATCTCTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTAAATGTTGTCTCTCAGAAGACATCAGAGATTGGACACAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACGCAAAAGGTTGAGGAATACACTAGAGATAGCCCCAATTCGACATCTGAAAAACAAAATGAAACTGATAAAAACGGTTTCTATCAGGAGTATAATCGAGAGAACAAAGGCTGGAATTCTTCTTCCAGAGAAGGGCAACAGTCTACGGGTGGACAAAATAATTCTTATCATTCAAGCTCTTGGGATGATTGGGGCCACAAAGATTCTAGGAAGGAACATCCTGCTAAAGGATCGCCTCATCAGTCATCAGGTGGGCTATCTGATGCTTATAACTCTAGCTCTTGGGATGATTGGGACCATGAAGACGCAAGGAAGAAAGAAGCAGCTAAAGGATCAGCTTCCCATAGCAGTGATGGTTGGGCTGGTTGGGATAATGCCAAAGATGATGGATTTGATGATTTCTATGGGAATGCATCTAATAATAAAGCTGCTGGTCATAATGATAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCACTAA 1458 0.5254 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIAKETDIVAKYNSNAASVYRDRIQAIADGRPWRDPPVVKESIRSSVSKEKPPLATGNNGGWDNWDTDEFGSARGGSDLRRNQSTGDVRGFGGGGSVARSKSTEDMYTRAQLEASAANKEDFFARKRAENESKPEGLPPSQGGKYVGFGSSPAPSQRANQQSDYLSVVSQGFGKLSLVAASAAQSAANVVQAGTKEISAKVKEGGYDYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMATQKVEEYTRDSPNSTSEKQNETDKNGFYQEYNRENKGWNSSSREGQQSTGGQNNSYHSSSWDDWGHKDSRKEHPAKGSPHQSSGGLSDAYNSSSWDDWDHEDARKKEAAKGSASHSSDGWAGWDNAKDDGFDDFYGNASNNKAAGHNDKAGVAWTGGGFH 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02281 485 Pfam Putative GTPase activating protein for Arf 4 102 IPR001164 GO:0005096
Vian2g02281 485 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Vian2g02281 485 MobiDBLite consensus disorder prediction 356 385 - -
Vian2g02281 485 MobiDBLite consensus disorder prediction 331 485 - -
Vian2g02281 485 MobiDBLite consensus disorder prediction 331 347 - -
Vian2g02281 485 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 109 IPR001164 GO:0005096
Vian2g02281 485 MobiDBLite consensus disorder prediction 419 437 - -
Vian2g02281 485 CDD ArfGap_ArfGap1 2 116 - -
Vian2g02281 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 408 IPR044519 GO:0005096|GO:0016192
Vian2g02281 485 MobiDBLite consensus disorder prediction 213 247 - -
Vian2g02281 485 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Vian2g02281 485 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Vian2g02281 485 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Vian2g02281 485 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Vian2g02281 485 FunFam ADP-ribosylation factor GTPase-activating protein 1 128 - -
Vian2g02281 485 MobiDBLite consensus disorder prediction 123 191 - -
Vian2g02281 485 MobiDBLite consensus disorder prediction 386 402 - -
Vian2g02281 485 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02281 Vian-Chr2 43094370 43098063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02281 4 82 C2H2 Transcription Factor Family AT4G21160 51.250 6.79e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02281 K12492 - gmx:100801306 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02281 2 43094370 43098063 Vian2g02281 2 43094370 43098063 ECH