Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02271 ATGTTCTCCAGTTTCCACGCCTTAAAAACCGAAAATATTCGTGGAATTTATCATTATAGTCTTTTCCAAATCTGCGGTGTAAATTTCAAGTTGTCACAATCAAATCTTGTTTATGCAGTGAATTCTGCATTGATGATGACAACTGAAAGCGTGGTAGAAATAAGGGTTTGGAAGGACAAATCAGAGGAAAACAATGACAGACCACGTACAAAGCTTCGCATCTTATCTCTGGTGTGGGTATGTATTTGTGAAGTGTTGCTAAAGCCACAGAGAGAAGAGCAGAAAACCGATGCCGCCGCCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCCTCCGAGGCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTACACTATCCAATCGACGTCGACGACCTTACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGAGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCGCGCGGCACAACACGAGAGCCGCCGAGGAGAGCGTGAAGGCATCCGCGAAGGAATCCACAGGGTGGATTCCTGCGAGACGCCGGCCGCAACGGCAGCGGCGGTTTCGAGAGTTTCGGAAACTGTGAGGAACGCGGCGGAACCGACAGAAGGAGGCGCCGGCGGTCCGGTGCCTTCGACGAGTGCCGGTGACGGAAGGAGCACGATGATGTGCGACGTGACTATGGCATCGTCGCCGGGCAGTTCGAGTACTAGCGGCGAGCCAGTTCAGGTGGCGCAGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAGGCGGAGGAATGGGATTCTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGCTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATGGGGATGGGGGTTGGAATGGGTATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCAGCAGCAACAGCAGCGGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCGTGTTCCTGCTCCCGATTCTTCCAGAATGCAAGCAGAAAATCAGTCAGATAAAAATATGGTTGCAGCTGGTCCACCTGATCCAAACCACTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATTCAGGTTAGATTTTCCGACACCTAA 1440 0.5174 MFSSFHALKTENIRGIYHYSLFQICGVNFKLSQSNLVYAVNSALMMTTESVVEIRVWKDKSEENNDRPRTKLRILSLVWVCICEVLLKPQREEQKTDAAAQKLPRCLRRRSLRGQGDSTAARQFQSTSLHARRRNGFLATLSNRRRRPYRPPPHVRTASTSNSAAETAGTEDAELRVLRAAQHESRRGEREGIREGIHRVDSCETPAATAAAVSRVSETVRNAAEPTEGGAGGPVPSTSAGDGRSTMMCDVTMASSPGSSSTSGEPVQVAQAEERKRKGREAEEWDSQSEDVDFESEAKKQARGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQAENQSDKNMVAAGPPDPNHSRLPNFTDPYQQYLGPHQMQFQVIQVRFSDT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02271 479 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 246 344 IPR031066 -
Vian2g02271 479 MobiDBLite consensus disorder prediction 270 285 - -
Vian2g02271 479 MobiDBLite consensus disorder prediction 239 268 - -
Vian2g02271 479 Pfam Helix-loop-helix DNA-binding domain 316 340 IPR011598 GO:0046983
Vian2g02271 479 Gene3D - 303 351 IPR036638 GO:0046983
Vian2g02271 479 MobiDBLite consensus disorder prediction 419 449 - -
Vian2g02271 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 367 IPR011598 GO:0046983
Vian2g02271 479 MobiDBLite consensus disorder prediction 135 324 - -
Vian2g02271 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 345 IPR036638 GO:0046983
Vian2g02271 479 MobiDBLite consensus disorder prediction 172 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02271 Vian-Chr2 42969959 42986842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02271 130 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 33.424 4.51e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g02271 HLH 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02271 - - gmx:100797225 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02271 2 42969959 42986842 Vian2g02271 2 42969959 42986842 ECH