Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02262 ATGACAGCAGTTGCCGGACGCCCTGCCGGAATCTGGCCGTTTGCCTCTTGCTCTCTCACCTTTCTCTCTCCTCCTGATGATGCTAAACGTAGACTGCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCCTCTTTGCTTTTCTCAACTTGCTTTCCTCTTCCCAAGTGAATTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGCTAAACCTTCTTTTGGACCTTCTTCTGCACCCATTCCATCTCCACATCATCAAGGTCCTTACATGACTCCAAGACAGAGACATCATTATCGGCACCGTCACCATCACAGCATGAGACCTTATGTAGTGGCTCCACCCCCTTCAAAAGACCAAGCTTGTGACCAAATCTGCACTGAACCACTTACATCAACTCCCTTTGGTTCACCTTGCGGTTGTGTATTTCCCATGAAGGTCCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGACAGAAATTGCGTTAGGCACGTATCTAGAACAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAATTTGGTTCCTCTGGGAGAGAAATTTGACAATACAACCGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATTACTTATCCAGGAATGCCATCTTCACCTCCATATGGATCTGTAGTTGGGAGTGGTCCCAGTCAAAGTGTTCAGGGAATTCTTCCGGTCAGTGCCAACTTTGTCGGCAGAAACCAGAAAATGAATGTCAGAACCATAATCATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTAGTGGGAGCATTTTCAATTATTTTGAAATGGAAGAAGAGTAGGAGACCATCGAATGCTGTTGGCCCTGCATTCACATCATCTTTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGCATTACTAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCTCTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGCGAATACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTTCTAACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTTAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCATTGCTTGGTGTATGAACTTGTTCGCAATGGCAGTGTCGAGTCCCATCTGCATGGTAGAATTTTCATCAGCTCACAACGCTCAGCCCATGTACTAGTCTTTCTGTTATCTCTATTAAATCATTTAAATACTTTTTATGATATTATAGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCATATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCTCCCGAATATGCAATGACAGGGCACTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGTAGAGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTTCAGGCTCTTAAGTTAATATACAATGACACAGATGAGACGTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGATCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATAACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAGATATCGTTACCGATTAGGCATGGGAATAGATCCGGCCCCTTAAGAACAGTCCGAAACAAACTTTCTTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCGAAGCGTAATTGGAACGATGGTTACTGGGTTTAA 2448 0.435 MTAVAGRPAGIWPFASCSLTFLSPPDDAKRRLRLERMPVSVVFLFAFLNLLSSSQVNSFSLSVSFASSEQAKMWFAKPSFGPSSAPIPSPHHQGPYMTPRQRHHYRHRHHHSMRPYVVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELETEIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGSVVGSGPSQSVQGILPVSANFVGRNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWKKSRRPSNAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRILGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRHCLVYELVRNGSVESHLHGRIFISSQRSAHVLVFLLSLLNHLNTFYDIIGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02262 815 ProSiteProfiles Protein kinase domain profile. 381 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02262 815 Gene3D Phosphorylase Kinase; domain 1 352 456 - -
Vian2g02262 815 PANTHER OS01G0750732 PROTEIN 120 706 - -
Vian2g02262 815 Pfam Protein tyrosine and serine/threonine kinase 383 684 IPR001245 GO:0004672|GO:0006468
Vian2g02262 815 CDD STKc_IRAK 387 687 - -
Vian2g02262 815 FunFam receptor-like serine/threonine-protein kinase ALE2 354 456 - -
Vian2g02262 815 Gene3D Transferase(Phosphotransferase) domain 1 486 709 - -
Vian2g02262 815 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524
Vian2g02262 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Vian2g02262 815 SUPERFAMILY Protein kinase-like (PK-like) 359 687 IPR011009 -
Vian2g02262 815 MobiDBLite consensus disorder prediction 794 815 - -
Vian2g02262 815 FunFam Receptor-like serine/threonine-protein kinase ALE2 490 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02262 Vian-Chr2 42781432 42788067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02262 131 804 Receptor kinase-like Gene Family AT5G56890 52.017 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vian2g02262 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02262 - - gmx:100792309 1312.75