Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02253 ATGGAAGATGAACGCAGAGACAAAGACAAACACGCAACAAAATCTGACAACTCAGGGACCCAATTAAAAGTTCTTATTGTAGATGATGATAAGGTTGTTCGACTGACTCACAAAATGCTGTTGGACAGAGTTGGGGTAAAAGATCACGTTGCTGTGGAAAATGGCAAAGAAGCAGTTGAACTTCACAACAATGGTCAAAGTTTTGACCTGATTCTCATGGACAAGGACATGCCAGTCATGAATGGAACTGAGGCAACAAGGACACTTCGTTCAATGGGCGTTAGTTGCAAGATCTTTGGTGTGTCGTCATCAACCTCTAATCAGATATATGTAAAAGAATTTGTTGAAGCAGGGCTGAATGGCTTCTACACAAAACCCTTGACTGTTAAAATTCTTGGTGAAATTCTTGAGAAGATTAAGTCATGA 426 0.4014 MEDERRDKDKHATKSDNSGTQLKVLIVDDDKVVRLTHKMLLDRVGVKDHVAVENGKEAVELHNNGQSFDLILMDKDMPVMNGTEATRTLRSMGVSCKIFGVSSSTSNQIYVKEFVEAGLNGFYTKPLTVKILGEILEKIKS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02253 141 CDD REC_hyHK_CKI1_RcsC-like 24 136 - -
Vian2g02253 141 SMART REC_2 22 136 IPR001789 GO:0000160
Vian2g02253 141 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Vian2g02253 141 SUPERFAMILY CheY-like 21 139 IPR011006 -
Vian2g02253 141 ProSiteProfiles Response regulatory domain profile. 23 140 IPR001789 GO:0000160
Vian2g02253 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 140 - -
Vian2g02253 141 Gene3D - 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02253 Vian-Chr2 42696192 42696776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02253 22 128 Response Regulator Gene Family AT3G04280 48.148 3.53e-25 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian2g02253 Response_reg 1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02253 - - var:108322984 162.155