Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02237 ATGGCGCCGAATCCAAGAGTGATCGCGGCGTTTTCGGCAATGGCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAGCTGCTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAGTTACAGGACTCTGGCTGATGCAATATTTGAGGAGGAAGAAAATAAGGATGAGGATGTGGACAACGAAGAAGCTCATATGCATGAGGAGCCTTTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTCACGCCCTCTAACTAATCGTGGCCACATCTCAGCTGCCTTTCTGTTGAAAACTCCAAAATTGGAAGAAGGCACAGTGCCTGAAATTAGTTCCAGACTGCAGCCTCAAAGCAGTGCTGCATTATCTGATGGAAATGCAAGGAATGATGCTCCTCATGTTCCCTCACAAGATGCTATTGTCAACAGGGGAAAGCAACCTGTATCACCTCAGGTTACACCTAGAGGGGGAAGGTCTATGTCCGACCATACTTCCCTTGCAGAACCACTAAAAGAGTCAGCAGCTGAACCACGAGCTGCTCCGTTGGCCAATAACAAAATGCTTGTTCCATTTACTTTGATCAAGCCCAAGGATGAGCCTGTTGATGATTTTCCAGCTTGTGAGATTCCCCTTGCTGTGATTCCTCCTGAACCATCAAGTGGAGGAGACTCTCTAATGGATGCAGCTGAAAAGCAAGATGACCACGATACTCTGGCATCACAATGCAACGATGAAAACGTTGAGCATGAATATATTATTTCTTCCTCAATTGAAGAACGAACTTCTCATGTAGATGTAGCATTGCCATCTATGGGAGAGGAACAATGTGTAAAGATAACACAAACTGATGATATTTCAAAGGAATCCGAGACCAATGTCTCACCTAGCGTGAGAGGAAATAAAGATCCAGTCATTGAAAACGAAATCAGTGTCAGGTCTTCTTCAGCCTTGGCTGAACCTGAAGTTCCTAGTTCTATACGCTGCCCAAGTGGTCAAGACGATTCTGTACTAGCTTCCAAGAAGGTTAGGACTAATGGTCTCTTACAAAGTAATGGTGGGAAGGAGCCAGAGGATCCTATATCTACAAATTCAGGTACCTCAGTGGTTGTTCCAAAATGTGAGTTTACGACTGAAAATGATGCAAGGGCTATTCACGATGTTAATGACCTGGCAAAGGGTGAAGAAACAGTAAATATTTCATGGGTGAATAACACTACTAGTGATCTTCCGCCACCCTTTCACTACATACCCCAAAACCTTGTCTACCGAGATGCTTATGTTAATTTTTCTCTATCTCGTATTGGAAATGAGGATTGTTGCTCAACTTGTAAGGGAAATTGTGTATTGTCATCTAAACCATGTCGTTGTACAAATAAAACTGGGGGTGAATTTGCTTTTACGGCACATGGCCTACTAAAGGAAGCTTTCTTGGAAGAGTGTATTGCCATTAACCGTAATTCCAAAAATTATTTCTATTGCAAAGCCTGTCCATTCGAACAATCAAAGAATGATGATTGTTTGGAACCATGTAAAGGACACTTAAAGCAGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGCAAAACATTGTGGCAATCGGGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCACCTTTGTATGTGAGTTTGTTGGGGAAATTTTAACTGTCACAGAGTTGCACGAGAGGAACATGAAAAATCCAAAAGGTGGGAAATATACATTTCCAGTTTTATTGGATGCAGATTGGGACTTAGGAGATGTGAAGGATAGGGAAGCTCTTTGTTTATATGCGGCATCATATGGAAATGTTGCTAGATTTATTAATCACAGATGCTTGGATGCAAATTTAATTCAGATCCCAGTTGAAGTCGAGTGCCCAACTCATCAGTACTATCATTTAAAGGGTTTTTGTCTAGAAAAGCTTATGTGCATAGTGTATCTGCAGGATTATGGCATCAACTTTGATGATCACGATGAGTCTGTTGAGCTTTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCACATAGTCGCGGAGGATCGGCGGGGAACAAGTTTAGGATGTCACTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGCGCCAAGAACCTCTACATCATATCAGTGAAGGGGATCAAGGGGAGGCTGATTTATTCGAATGATTTTTTATTTGGTTGTTTCTTCTATGCAGATAATGCCGGTGTTATCGTGAATCCGAAGGGTGAAATGAAAGGTTCTGCTATTACTGGACCAATTGGAAAGGAGTGTGCCGATCTCTGGCCCAGGATTGCAAGTGCTGCCAATGCCATTGTTTAA 2448 0.4301 MAPNPRVIAAFSAMANLGIHESKVKPVLKKLLKLYDKNWELIEEESYRTLADAIFEEEENKDEDVDNEEAHMHEEPLRPLKRLRLRGQEGQSSRPLTNRGHISAAFLLKTPKLEEGTVPEISSRLQPQSSAALSDGNARNDAPHVPSQDAIVNRGKQPVSPQVTPRGGRSMSDHTSLAEPLKESAAEPRAAPLANNKMLVPFTLIKPKDEPVDDFPACEIPLAVIPPEPSSGGDSLMDAAEKQDDHDTLASQCNDENVEHEYIISSSIEERTSHVDVALPSMGEEQCVKITQTDDISKESETNVSPSVRGNKDPVIENEISVRSSSALAEPEVPSSIRCPSGQDDSVLASKKVRTNGLLQSNGGKEPEDPISTNSGTSVVVPKCEFTTENDARAIHDVNDLAKGEETVNISWVNNTTSDLPPPFHYIPQNLVYRDAYVNFSLSRIGNEDCCSTCKGNCVLSSKPCRCTNKTGGEFAFTAHGLLKEAFLEECIAINRNSKNYFYCKACPFEQSKNDDCLEPCKGHLKQKFIKECWSKCGCAKHCGNRVVQRGISCKLQVFLTSDGKGWGLRTLEDLPKGTFVCEFVGEILTVTELHERNMKNPKGGKYTFPVLLDADWDLGDVKDREALCLYAASYGNVARFINHRCLDANLIQIPVEVECPTHQYYHLKGFCLEKLMCIVYLQDYGINFDDHDESVELFQCRCGSKFCRNIKRSHSRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLIYSNDFLFGCFFYADNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02237 815 MobiDBLite consensus disorder prediction 59 101 - -
Vian2g02237 815 MobiDBLite consensus disorder prediction 117 187 - -
Vian2g02237 815 Pfam SET domain 566 654 IPR001214 GO:0005515
Vian2g02237 815 Gene3D - 1 60 IPR043017 -
Vian2g02237 815 SMART preset_2 398 538 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian2g02237 815 Pfam Ribosomal protein L14p/L23e 773 815 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vian2g02237 815 MobiDBLite consensus disorder prediction 66 88 - -
Vian2g02237 815 MobiDBLite consensus disorder prediction 153 171 - -
Vian2g02237 815 MobiDBLite consensus disorder prediction 339 377 - -
Vian2g02237 815 Pfam Pre-SET motif 402 546 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian2g02237 815 ProSiteProfiles Pre-SET domain profile. 450 551 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian2g02237 815 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 748 IPR025776 -
Vian2g02237 815 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 718 - -
Vian2g02237 815 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Vian2g02237 815 MobiDBLite consensus disorder prediction 292 377 - -
Vian2g02237 815 SUPERFAMILY SET domain 408 709 IPR046341 -
Vian2g02237 815 SMART set_7 554 696 IPR001214 GO:0005515
Vian2g02237 815 Gene3D Ribosomal protein L14 712 767 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vian2g02237 815 Gene3D Ribosomal protein L14 769 815 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vian2g02237 815 SMART Ribosomal_L14_2 730 815 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vian2g02237 815 SUPERFAMILY Ribosomal protein L14 722 815 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vian2g02237 815 MobiDBLite consensus disorder prediction 121 136 - -
Vian2g02237 815 ProSiteProfiles SET domain profile. 554 690 IPR001214 GO:0005515
Vian2g02237 815 Gene3D SET domain 401 711 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02237 Vian-Chr2 42440416 42450192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02237 717 815 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 61.594 5.41e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian2g02237 Pre-SET 4.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02237 - - var:108323268 1325.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02237 2 42440416 42450192 Vian2g02237 2 42440416 42450192 ECH