Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02235 ATGGAAGCACGTTCTACTTTCTCTATTGAAAGATCAAATGCTAAGCAACACAATAACATGGGGATGTCTGAAGCATTTCCTTCATCGTTGCCTGTCCTTTCAATGCCTCTAGAAGGGACATGCCCCAAATTATCTGATTCTCAGCCAGCATTTATGGAAAAAGCGCTTAAACCAAAACCTTTTACTCATTCAAATCATTTAACTACCAGCGGAGCTGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAGCACCCTATAAATACTCCTTTTATTTCACAGTCAATGAGTAACAAGGCTTCACTGCCATTATCTTATTCTTCAAATAGTGAACCATTACCTTCTACAACATCAACACCTTATTCCAATGGAAACAGTGTTTCCTGGCATTCAGATTCCCTATCTGGCTTTCTTGATTTCCCTGCCAATACCTCAATTGATAATAGTCAAGCAGAAAGCAATGCCTGCAATATTATGGCAAATGAAGAGTATTCTACTAAGCGAAGTGATTGGCAGGAGTGGGCTAACCAGTTAATCGGTGATGATGATCCCTTGACTGCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCGAAGGCCTCAAATTCATCTTCACAGCTTCCCATAGGACACCAATCCCAAAGCCATCAACAACTTAGTGTTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCGTCAGCAAATTCAGTACCTTCCAAGCCACGAATGCGCTGGACACCTGAACTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACACCTAAAGGTGTGCTGAAGCTTATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGGTGACAGCTAGATATAGGCCTGAGTCATCTGAAGGAGCTGCCGAGAAAAAACTAAGTCCAATTGAAGAGATATCATCTCTAGATTTGAAAACGATCCTAGAGACTGACACTAACACTTACAGCACTAGTATTCAACTTGCATGGGATTTCATCCCTATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGCTGCGAATAGAAGAACAAGGAAGGTACCTTCAAATGATGTTTGAGAAACAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCTGCCGGTGATAGTCCATCTGGAGTTTCTTCTGATGTCATGAAAGATTCTACAGCCAAAACTGATTCCGAAACTGTCAAAGTGGATCTTTGCGAGTCAGGACCTGATCAAGCAAATGGCAGTACCAAAGTTGAGGAAAGCTCATCGAAAGTGGATGAGAAGCAGGATCCTGCTGAATGTAAAGCATCTGAGAATCCTAAGCAACATGCTAGTGAAGATAGTTCTCAAGCCCCAAAGCGTCAAAGGACTGAGGATTAA 1503 0.4172 MEARSTFSIERSNAKQHNNMGMSEAFPSSLPVLSMPLEGTCPKLSDSQPAFMEKALKPKPFTHSNHLTTSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPINTPFISQSMSNKASLPLSYSSNSEPLPSTTSTPYSNGNSVSWHSDSLSGFLDFPANTSIDNSQAESNACNIMANEEYSTKRSDWQEWANQLIGDDDPLTANWNDLLADNIQDLEPKASNSSSQLPIGHQSQSHQQLSVSSGENRVGVAPSSSANSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQVTARYRPESSEGAAEKKLSPIEEISSLDLKTILETDTNTYSTSIQLAWDFIPITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSAGDSPSGVSSDVMKDSTAKTDSETVKVDLCESGPDQANGSTKVEESSSKVDEKQDPAECKASENPKQHASEDSSQAPKRQRTED 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02235 500 MobiDBLite consensus disorder prediction 115 137 - -
Vian2g02235 500 Coils Coil 363 383 - -
Vian2g02235 500 MobiDBLite consensus disorder prediction 215 259 - -
Vian2g02235 500 SUPERFAMILY Homeodomain-like 257 310 IPR009057 -
Vian2g02235 500 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 316 IPR017930 -
Vian2g02235 500 Gene3D - 258 316 - -
Vian2g02235 500 MobiDBLite consensus disorder prediction 461 500 - -
Vian2g02235 500 FunFam Myb family transcription factor 258 318 - -
Vian2g02235 500 NCBIfam myb-like DNA-binding domain, SHAQKYF class 259 311 IPR006447 GO:0003677
Vian2g02235 500 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 229 489 IPR044848 GO:0003700
Vian2g02235 500 Pfam MYB-CC type transfactor, LHEQLE motif 361 407 IPR025756 -
Vian2g02235 500 MobiDBLite consensus disorder prediction 87 106 - -
Vian2g02235 500 MobiDBLite consensus disorder prediction 413 431 - -
Vian2g02235 500 Pfam Myb-like DNA-binding domain 261 309 IPR001005 -
Vian2g02235 500 MobiDBLite consensus disorder prediction 413 500 - -
Vian2g02235 500 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g02235 500 MobiDBLite consensus disorder prediction 215 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02235 Vian-Chr2 42421671 42426489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02235 56 448 G2-like Transcription Factor Family AT4G28610 49.261 8.21e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian2g02235 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02235 - - gmx:100810560 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02235 2 42421671 42426489 Vian2g02235 2 42421671 42426489 ECH