Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02234 ATGACAACTTTCCAAAAGGTTCATGCTTTAGTCTTTCATATACTCTTGCTAGCTTTGCTTCCATTGAAAATCGCTTCATCACTAACAGCAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTTTATCCTCTCCTCTTCCTCCTTCTCAAGACTCATGGTCCCTCACCAACCTTTCCAACCTTTGCATTTGGGATGCCATTGTTTGTGACAATACCAACACAACAGTCTCAGAGATAAACTTGTCTGGTGCTAATCTCACTGGGACTCTCTCTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGCCAACAACTTTGGGGGGTCAATACCATCAGAAATTGGCAAACTCTCCAAGCTCACACTATTGGACTTGGGGAACAACTTATTTGAAGACTCACTGCCTAAAGAACTAGGCCAGCTAAGGGAGCTTCGATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTACCTAAGGTATGGTACATGAACCTCGGATCAAATTATTTCATAACTCCTCTTCACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCATCACTCACTGGTCAATTCCCGAGTTTCATACTTGAGTGCCATAACTTGACATACCTTGACATCTCTCAGAATGGATGGAATGACACTATTCCAGAATCTTTGTATAGCAATTTGGGCAAGCTAGAATACCTCAACCTCACCAACAACGGGTTTGGAGGAAAGCTGTCACCCAACTTGTACATGCTTTCTAATCTCAAAGAACTTCGTATTAGTTATAACATGTTTAATGGTCCTGTTCCCACTGAGTTAGGATTGATATCTGGGCTTCAACTTCTTGAAATGAAGAGTATTTCTGCCTATGGGAAGATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTGTGGCATCTTGATCTCAGTATAAATTCTTTTAACTCTACAGTTCCTTCGGAGCTTGGCCTGTGCAAAAATCTATCTTTCTTGAGCTTAGCAGTGAATGATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAACTCCTTTTCTGGTGAACTTTCTGCTACGCTTTTCTCTAACTGGACCCAGTTGATCTCCTTGCAAATCCAAAACAATAACTTTACAGGAAAGCTTCCTCCACATATTGGCCTGTTGAAAAAACTTAACTTTCTCTACCTGCACAATAATCACTTCTCTGGTCCCATTCCTGTGGAGATTGGAAACCTGAAGGAATTGACATGGTTAGACCTTTCACAAAACCAATTCTCTGGCCCAATTCCATCAACTCTTTGGAATCTGACTAACATTCAACTCATGAATCTTTACTTCAATGAGCTCTCTGGAACCATCCCCACGGATATTGGAAACTTGACCTCACTCCAAATCTTTGATGTCAGCAACAATAAATTGTATGGGGAGTTGCCAGCAACCATTGCTCAACTAACTGCTTTAAGAAATTTTTCAGTGTTCAGCAATAACTTCACTGGCAGCCTTCCTAGACAATTTGGAAAGATTAATCCTTCTTTGACCTGCGTCTACCTTTCAAACAACAGTTTCTCAGGAGAACTGCCACCTGACATATGCAGTGGGGGCAAACTAATTATTTTTGCAATCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTCCATCACTTATTAGAGTTCGGCTTGATGATAACCAGCTCAGTGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTTGTTTTTATCTCACTTAATACAAACCAACTAGTGGGTGAGCTATCTCCCGAGTGGGGCGAGTGTGCCAGCTTAACCAATATGAATATGGGAAGCAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGTTGAGTCAATTAAGGTATCTAAGCCTTCATTCCAATGAATTCACTGGTAGTATCCCACCCGAAATCGGAAATCTAAGCCTGCTTTACTCGTTCAATTTGAGCAGTAACCATTTATCCGGAGAAATCCCAAAGAGTTATGGGAGATTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAAATCGGTGATTGTGATGGCTTACTGAGCCTGAATTTAAGCCATAACAGTCTATCTGGGGAGATACCAGATGAACTTGGCAATCTGTTCTCACTGCAAATAATGTTGGACATCAGCGGCAACTCTCTTTCCGGGGCTCTTCCCCAAAACCTTGAAAAGTTAACAGCATTGGAAATTCTCAATGTGTCACACAACCATCTATCAGGGACAATCCCACGATCATTTTCAAGCATGCTCAGCCTTCAATCTATTGATTTTTCTTATAACAAGCTGAGTGGTTCAATCCCCACAGGCCGTGTTTTCCAGACAGCAACTGCTGAAGCCTATGCAGGAAACTCAGGTTTGTGCGGTGAGATAAAAGGATTAACATGCCCCAAATCACTTTCCCCGGACAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGTTTATCATACCAGTTTGTGTATTAATTGGGATGATTAGTGTTGGAGCAATACTTCGCCGGCGGCATATCATAAAAAACCTTGATGAAGTGTCCAAAAGCAATGAAAAAAGTGATCAGCCTATCAGCGTGGTGTGTGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGACTTCAATGACAAGTACTGCGTTGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAATTACCCACAGGTCAAGTCGTTGCTGTGAAGAGGCTCAACATATCATACTCCGATGACATTCAACCAATGAACCGCCATAGCTTTTTGAATGAGATAGAAGCACTTACAGAACTGGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTGTCTTCAAACAAGTATTTGTCATCAACGGAGGAAGCACAGGTGCTACTGAAGGACGTGCTTGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTGGTGTTCACAATGACCATAGCTTTGGCATGCATACGTGAGTCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCTCAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTACCATGATTACCATGAACAAGCTTAGAGGCTTCCAGAAGTAG 3324 0.4224 MTTFQKVHALVFHILLLALLPLKIASSLTAEAEALVKWKNSLSSPLPPSQDSWSLTNLSNLCIWDAIVCDNTNTTVSEINLSGANLTGTLSALDFASLPNLTQLNLNANNFGGSIPSEIGKLSKLTLLDLGNNLFEDSLPKELGQLRELRYLSLYNNNLNGTIPYQLMNLPKVWYMNLGSNYFITPLHWSQYSCMPSLTRLALHLNPSLTGQFPSFILECHNLTYLDISQNGWNDTIPESLYSNLGKLEYLNLTNNGFGGKLSPNLYMLSNLKELRISYNMFNGPVPTELGLISGLQLLEMKSISAYGKIPSSLGQLRELWHLDLSINSFNSTVPSELGLCKNLSFLSLAVNDLTGPLPMSLANLTKISELGLSDNSFSGELSATLFSNWTQLISLQIQNNNFTGKLPPHIGLLKKLNFLYLHNNHFSGPIPVEIGNLKELTWLDLSQNQFSGPIPSTLWNLTNIQLMNLYFNELSGTIPTDIGNLTSLQIFDVSNNKLYGELPATIAQLTALRNFSVFSNNFTGSLPRQFGKINPSLTCVYLSNNSFSGELPPDICSGGKLIIFAINNNSFSGPLPKSLRNCPSLIRVRLDDNQLSGNITDAFGVLPNLVFISLNTNQLVGELSPEWGECASLTNMNMGSNKLSGKIPSALSKLSQLRYLSLHSNEFTGSIPPEIGNLSLLYSFNLSSNHLSGEIPKSYGRLAKLNFLDLSNNNFSGSIPKEIGDCDGLLSLNLSHNSLSGEIPDELGNLFSLQIMLDISGNSLSGALPQNLEKLTALEILNVSHNHLSGTIPRSFSSMLSLQSIDFSYNKLSGSIPTGRVFQTATAEAYAGNSGLCGEIKGLTCPKSLSPDKSGGVNKKVLLGFIIPVCVLIGMISVGAILRRRHIIKNLDEVSKSNEKSDQPISVVCGRDGKFTFSDLVKATDDFNDKYCVGKGGFGSVYRAQLPTGQVVAVKRLNISYSDDIQPMNRHSFLNEIEALTELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLGTLSSNKYLSSTEEAQVLLKDVLDQRLPPPTGQLAEAVVFTMTIALACIRESPESRPIMRAVAQELSATTQPYLSQPFTMITMNKLRGFQK 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02234 1107 Gene3D Phosphorylase Kinase; domain 1 889 986 - -
Vian2g02234 1107 ProSiteProfiles Protein kinase domain profile. 928 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02234 1107 Pfam Leucine rich repeat 758 813 IPR001611 GO:0005515
Vian2g02234 1107 PANTHER RECEPTOR-LIKE PROTEIN 55 39 167 - -
Vian2g02234 1107 Gene3D Transferase(Phosphotransferase) domain 1 987 1099 - -
Vian2g02234 1107 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 535 850 - -
Vian2g02234 1107 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vian2g02234 1107 Gene3D Ribonuclease Inhibitor 189 288 IPR032675 -
Vian2g02234 1107 SUPERFAMILY RNI-like 503 818 - -
Vian2g02234 1107 Gene3D Ribonuclease Inhibitor 289 387 IPR032675 -
Vian2g02234 1107 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 434 531 - -
Vian2g02234 1107 SMART LRR_typ_2 245 269 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 536 559 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 317 341 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 486 510 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 438 462 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 776 799 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 703 727 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 365 389 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 607 631 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 122 146 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 98 121 IPR003591 -
Vian2g02234 1107 SMART LRR_typ_2 655 679 IPR003591 -
Vian2g02234 1107 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Vian2g02234 1107 Pfam Protein tyrosine and serine/threonine kinase 983 1082 IPR001245 GO:0004672|GO:0006468
Vian2g02234 1107 SUPERFAMILY L domain-like 53 380 - -
Vian2g02234 1107 SUPERFAMILY L domain-like 341 528 - -
Vian2g02234 1107 Gene3D Ribonuclease Inhibitor 513 848 IPR032675 -
Vian2g02234 1107 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Vian2g02234 1107 SUPERFAMILY Protein kinase-like (PK-like) 920 1080 IPR011009 -
Vian2g02234 1107 Gene3D Ribonuclease Inhibitor 388 508 IPR032675 -
Vian2g02234 1107 FunFam MDIS1-interacting receptor like kinase 2 193 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02234 Vian-Chr2 42416747 42420732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02234 245 986 Receptor kinase-like Gene Family AT4G08850 38.718 1.73e-150 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g02234 PK_Tyr_Ser-Thr 1.8e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02234 - - pvu:PHAVU_001G163700g 1607.04