Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02233 ATGACTAATTTTCAAAGGCTTCACACTCTAGTCCTTCCAATTATCTTCCTGTGTTTGTTTCCTTTGAGAATCGCTTCATCACCAACAGCAGAAGCAGAAGCACTTGTCAAATGGAAAAACAGTCTAACACCTCCTCTTCCTCCTTCTCTAAACTCATGGTCCCTCACCAACCTAACCAACCTTTGCTTTTGGGATGCCATTGTTTGTGACAATACCAGCACAACAGTCTTAGAGATAAACTTGTCTGGTGCCAATATCACTGGGACTATCACTGTCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGCCAACAACTTTGAGGGGTCAATACCACCAGCAATTGCTAACCTCTCCAAGCTCACACTTTTGGACTTGGGGAACAACTTATTTGAAGATGCACTGCCTAAAGAACTAGGCCAGCTAAGGGAGCTTCGATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTACCTAAGGTATGGTACATGGACCTTGGATCAAATTATTTTATAACTCCTCTTCACTGGTCCCAATATTCATGCATGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCAACACTCACTGGTCAATTCCCGAGTTTCGTACTGGAGTGCCATAACTTGACATATCTTGACATCTCTCAGAATGGATGGAATGGAACTATTCCAGAATCTTTGTATAGCAATTTGGGCAAGCTAGAATTCCTCAACCTCACCAACAATGGGTTTGGAGGAAAGCTGTCCCCCAACTTGTCCTTGCTTTCTAATCTCAAAGAACTTCGTATTGGTAATAACTTGTTTACTGGTCCTGTTCCCACTGAGATAGGATTGATATCTAGGCTTCAAATTCTTGAACTGAATAACATTTCTGCCCATGGAAAGATCCCTTCTTCCTTAGGCCAACTTAGGGAGCTGTGGCATCTTGATCTCAGTATAAATTCTTTTAACTCTACAGTTCCTTCGGAGCTTGGCCTGTGCAGAAATCTATCCTTCTTGAGTTTAGCGGTGAATCATTTGACTGGTCCTTTGCCTATGTCATTAGCTAATCTGACTAAAATATCAGAACTGGGATTATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTACGCTCCTCTCTAATTGGACCCAGCTTATCTCCTTGCAAGTCCAAAACAATAATTTTACTGGAAAGATTCCTCCGGAGATTGGCCTGTTGAAAAGAATTAACTACCTCTTTCTGTACAATAATACTTTCTCTGGTTCCATTCCTGTAGAGATTGGAAACCTGAAGGAAATGGTAAAGTTAGACCTTTCACAAAACCAATTCTCTGGTCCGATTCCATCAACACTTTGGGATTTGACAAACGTTCAAGTCATCAATCTTTTCTTCAATGAACTCTCTGGAATCATTCACGCGGATATTGGAAATTTTACCTCTCTTGAAATCTTTGATGTCAACAGCAATAACTTGTATGGGGAGTTGCCAGCAACCATTGCTCAACTAACTGCTTTAAGAAATTTTTCAGTGTTCAGCAATAACTTCAGTGGCAGAATTCCTAGAGAATTTGGAAAGGGAAATCCTTCTTTGACTGATGTCTACCTTTCAAACAACAGCTTTTATGGAGAACTGCCAATTGACTTGTGCAGTGGTGGCCAGCTAACTGTTTTGGCTGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCACCACTAGTTAGAGTGCGGCTTGATAATAACCAGCTCAGTGGAAACATCACAGACGCATTTGGGGTTCTCCCAAATCTCGTTTTGATATCACTTAGTACAAACCAACTGGTTGGTGAGCTCTCCCCGGAGTGGGGCGGGTGCGCCAACTTAACCAGTATGGATATGGGAAACAACAAACTTTCTGGAAAAATTCCTTCTGCGCTAAGTAAGCTGAGTCAATTAGGGTATCTAAACCTTCATTCCAATGAATTCACTGGTAGTATCCCACCTGAAATCGGAAATCTAAGCCGGCTTTTTAGATTGAATTTGAGCAGTAACCATTTATCAGGAGAAATCCCAAAGAGTTATGGGAGATTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCGGCGGAAGCATTCCTAAAGAAATTGGTGATTGTGACGGCTTGCTGAGCCTGAATTTAAGCCATAACAGTCTATATGGGGAGATACCAGAAGAACTTGGCAATCTGTTCTCGCTGCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCCGGGGCTCTTCCCCAAAACCTTGAAAAGTTAATAGCATTGGAGATTCTCAATGTGTCACACAACCAACTATCAGGGACAATCCCACGATCATTTTCAAGCATGCTCAGCCTTCAATCTGTTGATTTTTCTTACAACAAACTGAGTGGTTCAATCCCCACAGGCCGTGTTTTCGAGACAGCGACTGCTGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGAGATAGAAGGATTAACTTGCCCCAAATCACTTTCCACGGACAAATCTGGAGGAGTTAACAAAAAGGTTCTTCTTGGGGTTATCATTCCAGTTTGTGTATTAATTGGGATAATTAGTGTTGGAGCAATACTTCGCCGGCGGCATATCATAAAACACGCTGATGAAGAGTCCAAAAGCAATGAAAAAAGTGATCAGCCTATCAGCGTGGTGTGGGGAAGAGATGAAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATCGGAAAAGGAGGATTCGGAAGTGTTTATAGAGCACAGTTGCTCACAGGTCAGGTCGTTGCTGTGAAGAGGCTCAACATATCAGACTCCGATGACATTCCACCAATGAACCGCCTGAGCTTTTTGAATGAGATAGAAGCACTTACAGGAGTGAGACACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTACGAATATATAGACAGAGGAAGTTTGGCAAAAGTGTTGTACGGAGAGGAAGGACAATTGGAGCTAAGGTGGGCCAAAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACCTGCACACAGATTGTTCCCCACAAATCGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCCGATTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCAGACACTTCAACGTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAACTAGCACAAACAATGAGAGTGACGGAGAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGATGGAGATATTGATGGGAAAGCATCCTGGAGAACTGTTGGGTACACTGTCTTCAAACAAGTATTTGTCATCAACGGAGGAAGCACAGGTGCTACTGAAGGACGTGCTTGATCAAAGGCTTCCACCTCCTACAGGCCAATTGGCAGAAGCAGTGGTGTTCACAATGACCATAGCTTTGGCATGCATACGTGAGTCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCTCAAGAACTATCGGCTACTACTCAGCCTTATCTTTCCCAGCCATTTAGCTTGATAACCATGAACAAGCTTAGAGGCTTCCAGAAATAG 3684 0.4267 MTNFQRLHTLVLPIIFLCLFPLRIASSPTAEAEALVKWKNSLTPPLPPSLNSWSLTNLTNLCFWDAIVCDNTSTTVLEINLSGANITGTITVLDFASLPNLTQLNLNANNFEGSIPPAIANLSKLTLLDLGNNLFEDALPKELGQLRELRYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPLHWSQYSCMPSLTRLALHLNPTLTGQFPSFVLECHNLTYLDISQNGWNGTIPESLYSNLGKLEFLNLTNNGFGGKLSPNLSLLSNLKELRIGNNLFTGPVPTEIGLISRLQILELNNISAHGKIPSSLGQLRELWHLDLSINSFNSTVPSELGLCRNLSFLSLAVNHLTGPLPMSLANLTKISELGLSDNSFSGELSATLLSNWTQLISLQVQNNNFTGKIPPEIGLLKRINYLFLYNNTFSGSIPVEIGNLKEMVKLDLSQNQFSGPIPSTLWDLTNVQVINLFFNELSGIIHADIGNFTSLEIFDVNSNNLYGELPATIAQLTALRNFSVFSNNFSGRIPREFGKGNPSLTDVYLSNNSFYGELPIDLCSGGQLTVLAVNNNSFSGPLPKSLRNCSPLVRVRLDNNQLSGNITDAFGVLPNLVLISLSTNQLVGELSPEWGGCANLTSMDMGNNKLSGKIPSALSKLSQLGYLNLHSNEFTGSIPPEIGNLSRLFRLNLSSNHLSGEIPKSYGRLAKLNFLDLSNNNFGGSIPKEIGDCDGLLSLNLSHNSLYGEIPEELGNLFSLQIMLDISSNSLSGALPQNLEKLIALEILNVSHNQLSGTIPRSFSSMLSLQSVDFSYNKLSGSIPTGRVFETATAEAYAGNSGLCGEIEGLTCPKSLSTDKSGGVNKKVLLGVIIPVCVLIGIISVGAILRRRHIIKHADEESKSNEKSDQPISVVWGRDEKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPPMNRLSFLNEIEALTGVRHRNIIKLYGFCSCRGQMFLVYEYIDRGSLAKVLYGEEGQLELRWAKRLKIVQGIAHAISYLHTDCSPQIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEILMGKHPGELLGTLSSNKYLSSTEEAQVLLKDVLDQRLPPPTGQLAEAVVFTMTIALACIRESPESRPIMRAVAQELSATTQPYLSQPFSLITMNKLRGFQK 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02233 1227 Gene3D Ribonuclease Inhibitor 189 288 IPR032675 -
Vian2g02233 1227 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vian2g02233 1227 Gene3D Ribonuclease Inhibitor 289 385 IPR032675 -
Vian2g02233 1227 FunFam MDIS1-interacting receptor like kinase 2 1009 1208 - -
Vian2g02233 1227 Gene3D Transferase(Phosphotransferase) domain 1 1009 1212 - -
Vian2g02233 1227 Gene3D Ribonuclease Inhibitor 386 480 IPR032675 -
Vian2g02233 1227 SUPERFAMILY RNI-like 287 620 - -
Vian2g02233 1227 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Vian2g02233 1227 SUPERFAMILY L domain-like 49 380 - -
Vian2g02233 1227 Gene3D Ribonuclease Inhibitor 481 848 IPR032675 -
Vian2g02233 1227 SUPERFAMILY Protein kinase-like (PK-like) 903 1202 IPR011009 -
Vian2g02233 1227 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Vian2g02233 1227 SMART LRR_typ_2 317 341 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 655 679 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 703 727 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 486 510 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 776 799 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 438 462 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 607 631 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 98 121 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 245 269 IPR003591 -
Vian2g02233 1227 SMART LRR_typ_2 122 146 IPR003591 -
Vian2g02233 1227 SUPERFAMILY L domain-like 535 824 - -
Vian2g02233 1227 Pfam Protein kinase domain 930 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02233 1227 PANTHER LEUCINE RICH REPEAT KINASE 2 483 1206 - -
Vian2g02233 1227 FunFam MDIS1-interacting receptor like kinase 2 193 388 - -
Vian2g02233 1227 Gene3D Phosphorylase Kinase; domain 1 889 1008 - -
Vian2g02233 1227 FunFam Leucine-rich repeat receptor protein kinase MSP1 891 1008 - -
Vian2g02233 1227 ProSiteProfiles Protein kinase domain profile. 928 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02233 1227 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 434 531 - -
Vian2g02233 1227 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 535 850 - -
Vian2g02233 1227 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Vian2g02233 1227 Pfam Leucine Rich Repeat 779 799 IPR001611 GO:0005515
Vian2g02233 1227 CDD STKc_IRAK 934 1202 - -
Vian2g02233 1227 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1054 1066 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02233 Vian-Chr2 42405252 42409146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02233 10 649 Receptor kinase-like Gene Family AT4G08850 32.403 3.02e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g02233 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02233 - - pvu:PHAVU_001G163700g 2003.02