Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02229 ATGGACGATTCCACAAAACCTAACGCCGGCAAAACCAAACTTCTCAATCCATGGATGCTTCACTTCCAGAAGCTTGCTCTTGAACTCAAGTGTCCTCTCTGTTCATGCTTAGCTGATTGCGTAACAGCTGGGGCTGGTTCTGAATGTGCTGCTTGTAATGCAAAGTACGCTCAAACAGGTGATGAGAGGGTTTTGGAGCCATGCTCGGCAATTCTTAATTCAACTTCTAGCAGTATACAAGCTGGCAAACTTCCTCTGAATTTCCCTAATTTGAACAAGGTTGGGGTTGTCAAGAATCTCAAATCCAAGATTGCATTGCATGATAAAGCCGAAGAGCTTGAGTTGTCTCATGGGAGAGGGAAGCCTAATCCGATGCAATCTTCCCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAACATCCACTACCTCCTGATAGACTGGGAAACTCTTCCTTAAAGAGAGCTTGTACAGGAAATGGAAATTTGAATGAGAAAATGGGACAACTAAGGTCAGAAAGTTCAGCCTCTGAAACGGAGGGTCTTGGAAGGGATCCCAAGAGACAGAAAGTTCAGCCTGATGCTCCAAATGACTTTACTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCCAAAACCTCTGAGGCTACTGGACCAATGCTGCATTATGCCAATGGAAACTTAGTTACTGGAGATGCAGCAATGAAGCCAAATGTTATACCTGTGCATAGAGTTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAGTGGTTAAGAATCTCAAGGCTGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGCAGAAGAACTTATCATGTTACTTGTGCACTTGACATCTCAACATGTCGTTGGGATCATGAGGATTTTCTTTTGCTCTGCCCCTTCCATTCAAACGTCAAATTTCCATGTGAGAAATCAAGATCTAAGAAGCAGGCAGCTCGGAAGCATCCCAATTTGCCTAATTTGCCGTCGCACCACTCAAATACTCTTGAAGCTTCACAGGATGATGGTAAAAATATGATTTTCTGTGGATCCGCGTTATCAAATGAGGAAAAGGTACTTTTGCTCAATTATGCAAGTAAGGTTGGTGCAACTGTGACTAAATTCTGGACATCTAATGTTACACATGTAATAGCATCAACTGATGCTAATGGAGCATGCTCCAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTACTAAAACTGGATTGGATAAAAGCATGCATGGAAGAGAAAAACCTTGTAGAAGAAGAACCATATGAAATTAGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCTGGCAGACTTAAGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATATGTCAACTTATAAGGAAGATCTTGAAGAGTTAATTGAAGTGGGTGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAAGCGCAAAGACATGAATGCAAAGTGAATTCTCCAAAGTTTCTTGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTAGGGGAAGAAGTATCAATTCTCTGGCAAAGACTCAATGATGCAGAGGATTTAGCTGCCAATACTTTACAAGTGATTGGTCACACATGGATTCTTGAGTCAATTGCTGCATGTAAGTTGCAGCCTTTTGTTAACTAA 1833 0.4195 MDDSTKPNAGKTKLLNPWMLHFQKLALELKCPLCSCLADCVTAGAGSECAACNAKYAQTGDERVLEPCSAILNSTSSSIQAGKLPLNFPNLNKVGVVKNLKSKIALHDKAEELELSHGRGKPNPMQSSQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPDRLGNSSLKRACTGNGNLNEKMGQLRSESSASETEGLGRDPKRQKVQPDAPNDFTPTGSICSFCQSSKTSEATGPMLHYANGNLVTGDAAMKPNVIPVHRVCIDWAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVTCALDISTCRWDHEDFLLLCPFHSNVKFPCEKSRSKKQAARKHPNLPNLPSHHSNTLEASQDDGKNMIFCGSALSNEEKVLLLNYASKVGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNLVEEEPYEISVDNQGCQGGPRAGRLKALANEPKLFSGLKFYFSGDYMSTYKEDLEELIEVGGGTVLRSKEELEAQRHECKVNSPKFLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02229 610 SUPERFAMILY BRCT domain 389 476 IPR036420 -
Vian2g02229 610 Pfam BRCA1 C Terminus (BRCT) domain 392 462 IPR001357 -
Vian2g02229 610 SMART BRCT_7 498 603 IPR001357 -
Vian2g02229 610 SMART BRCT_7 383 465 IPR001357 -
Vian2g02229 610 Pfam BRCT domain, a BRCA1 C-terminus domain 498 607 IPR001357 -
Vian2g02229 610 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 105 608 IPR031099 GO:0006281|GO:0006974
Vian2g02229 610 CDD ePHD 266 345 - -
Vian2g02229 610 FunFam Breast cancer associated RING 1 223 348 - -
Vian2g02229 610 MobiDBLite consensus disorder prediction 201 215 - -
Vian2g02229 610 FunFam Breast cancer type 1 susceptibility protein homolog 386 492 - -
Vian2g02229 610 MobiDBLite consensus disorder prediction 134 222 - -
Vian2g02229 610 SUPERFAMILY BRCT domain 500 608 IPR036420 -
Vian2g02229 610 ProSiteProfiles Extended PHD (ePHD) domain profile. 226 346 IPR034732 -
Vian2g02229 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 348 IPR013083 -
Vian2g02229 610 CDD BRCT_Bard1_rpt1 390 468 - -
Vian2g02229 610 ProSiteProfiles BRCT domain profile. 385 475 IPR001357 -
Vian2g02229 610 Gene3D BRCT domain 498 603 IPR036420 -
Vian2g02229 610 FunFam BRCA1-associated RING domain protein 1 498 603 - -
Vian2g02229 610 MobiDBLite consensus disorder prediction 176 200 - -
Vian2g02229 610 Gene3D BRCT domain 386 491 IPR036420 -
Vian2g02229 610 ProSiteProfiles BRCT domain profile. 496 610 IPR001357 -
Vian2g02229 610 Pfam PHD-like zinc-binding domain 267 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02229 Vian-Chr2 42383417 42387815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02229 419 532 Core DNA Replication Machinery Family AT4G02110 29.412 3.11e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02229 K10683 - gmx:100784883 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02229 2 42383417 42387815 Vian2g02229 2 42383417 42387815 ECH