Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02217 ATGGATTCTGCTAGGAGTTGGTTACAGAAATTTCAACCACGAGATAAATTAAGAGCCTCAACTAGAAAGAAAGACGATACTCATGGTGGGAATGAAGCTCCAAACGTGCCTCTGGACGAAGCAGCTCTTTCCAATATCACAAAGCAGAAGGTTGCAGCAGCTAAACAATACATTGAAAACCACTATAAGGAACAGATGAAGAACCTTCAAGAAAGGAAAGAACGGCACAAGATGGGTGTAGATGATTTTGAGTTATTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAAGGAAAAGACTACAGATCATGTATTTGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAAGATGAGGAGTATTTATATCTTATCATGGAGTATCTACCTGGCGGGGATATGATGACTCTACTAATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTGGGAGAAACAGTTCTAGCCATTGAATCAATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAATTTATTACTTGATAAATATGGACACTTGAGACTGTCAGATTTTGGGTTATGTAAACCATTAGACTGTAGTACACTTGAAGAAACGGATTTTTCTGCTGGTCAAAATGCAAATGGATTTCCTCAAAGTGATGAATCTGGACGCACACAACAAGAACAATTGCAACACTGGCAAAAGAATAGGAGGACACTTGCTTATTCTACTGTCGGTACACCAGACTATATTGCTCCAGAAGTTCTATTAAAGAAAGGCTACGGGATGGAATGTGATTGGTGGTCACTTGGTGCTATTATGTATGAAATGTTGGTGGGATATCCGCCTTTTTATTCTGACGATCCAATGTCAACATGTAGAAAGATAGTAAATTGGAAATCTCATTTAAAGTTTCCTGAAGAAGCAAGGTTATCTGTGGAGGCTAAAGATCTTATCAGTAAGCTTTTATGTAATGTGAACCAGAGACTGGGCTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTTTTCAATGGTGTTGAGTGGGAAAGATTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAACGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACCACCAGACTCAATCAGCATCAAGAACTGGCGGTCCATGGAGAAAGATGCTTTCATCTAAAGACTTGAATTTTGTGGGATACACATACAAAAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGACTGAATTAAGAAAGAAAACTTCTAAAGTAAAGAAGCCATCCGTTAAGTCTCTTTTTGATTGTGATTCTGATACATCTGAAGCATCTGCATCTGAGGCTTCTGATTCAAATGCAAGCACAACTAAAAAGATTGATGATCAACATACTCATTCAGAATAG 1527 0.3818 MDSARSWLQKFQPRDKLRASTRKKDDTHGGNEAPNVPLDEAALSNITKQKVAAAKQYIENHYKEQMKNLQERKERHKMGVDDFELLTMIGKGAFGEVRVCKEKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFSAGQNANGFPQSDESGRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSVEAKDLISKLLCNVNQRLGSNGADEIKAHPFFNGVEWERLYQMEAAFIPEVNDELDTQNFEKFDESDHQTQSASRTGGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMTELRKKTSKVKKPSVKSLFDCDSDTSEASASEASDSNASTTKKIDDQHTHSE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02217 508 ProSiteProfiles Protein kinase domain profile. 83 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02217 508 Gene3D Transferase(Phosphotransferase) domain 1 167 396 - -
Vian2g02217 508 MobiDBLite consensus disorder prediction 475 494 - -
Vian2g02217 508 FunFam Non-specific serine/threonine protein kinase 277 396 - -
Vian2g02217 508 Pfam Protein kinase domain 84 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02217 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 433 - -
Vian2g02217 508 FunFam Non-specific serine/threonine protein kinase 54 166 - -
Vian2g02217 508 CDD STKc_NDR_like 81 443 - -
Vian2g02217 508 MobiDBLite consensus disorder prediction 9 30 - -
Vian2g02217 508 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Vian2g02217 508 FunFam Non-specific serine/threonine protein kinase 167 234 - -
Vian2g02217 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vian2g02217 508 Gene3D Phosphorylase Kinase; domain 1 81 407 - -
Vian2g02217 508 ProSiteProfiles AGC-kinase C-terminal domain profile. 379 452 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian2g02217 508 SMART serkin_6 83 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02217 508 MobiDBLite consensus disorder prediction 475 508 - -
Vian2g02217 508 Pfam Protein kinase C terminal domain 397 442 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vian2g02217 508 MobiDBLite consensus disorder prediction 242 262 - -
Vian2g02217 508 MobiDBLite consensus disorder prediction 1 37 - -
Vian2g02217 508 SMART pkinase_C_6 379 444 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian2g02217 508 SUPERFAMILY Protein kinase-like (PK-like) 68 423 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02217 Vian-Chr2 42268635 42273309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02217 1 472 AGC Kinase Gene Family AT1G03920 72.590 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vian2g02217 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02217 K08790 - gmx:100783286 881.708