Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02213 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGCTTTCGCTTTTATCCCAGTGACGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTCAAGGGTACCTTGGTGGAAATCGACCTCCATATATGTGAACCGTGGCAACTTCCAGAGGTGGCGAAGCTGAATGCGAACGAGTGGTACTTCTTCAGCTTCCGGGACCGCAAATACGCGACGGGGTTTCGAACAAACCGAGCAACCACTTCAGGGTATTGGAAAGCAACGGGAAAGGATCGAACGGTGGTGGATCCGACCACGCAAGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATAAAAACTGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGCTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATAACAACAGTTCGAAACTCATGTACGATTATGATACAACACCTCAATCCCTAACCATGGCGCCGTCGTCATCTCCCACCATGAACAGATTTTCCACCTCTTTCCCTTCCTCTATGCCATTGCCAACCAACCACCACCATCATCACCATTTCAACACAAACCAAAACTCTTCTTTCATGGATCTTCTTCACTTCTCTCGAGACACCAACACCAACAACACCATCGTTACTCAAATTACTTCCAAAGGTGATGATGGATATGGTTTCTTATGGGACATGGATTTGGAAGAAAATAGCTTACAAGATGGCGTGGCTTCAAACTTGGATGCAATAACCTTCGAGGTTGATAATAATAATAGCCATGAAAACAATATGGTATTCCTATAG 864 0.463 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNSSKLMYDYDTTPQSLTMAPSSSPTMNRFSTSFPSSMPLPTNHHHHHHFNTNQNSSFMDLLHFSRDTNTNNTIVTQITSKGDDGYGFLWDMDLEENSLQDGVASNLDAITFEVDNNNSHENNMVFL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02213 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 223 - -
Vian2g02213 287 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vian2g02213 287 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Vian2g02213 287 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vian2g02213 287 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02213 Vian-Chr2 42209987 42215352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02213 6 159 NAC Transcription Factor Family AT1G56010 58.025 7.00e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g02213 NAM 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02213 - - gmx:100782751 484.567