Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02211 ATGGAAGAAGCAGGTTATGATTGCCCCAAATTTCAGGAGAACGAAAATCTTGCAGTGCCCCCGGGTTTTGTATCCCTCACATCTTTCATTTTGAGAAAGAGTGGAAATGTTAAGAAAAATGATAACTCTACAGCCTTTCCAGTTGCATCTGAACAAGAGCCAAACTGTATGAAGACTGAACTTGAGACGAATGGCATTGATGCTTATAGGCAGGGTCTTATACGTCGGCCATGGATAAACATGGACCCGAGCAACAACCACAAGCCTAAGGAATCTCACACAAAGCATCTTCCTATGGTTAAGTTGGGAATCTTGCATTTTTTTGGACTTGATAATTTTTCATTTTCTTTTTGTGAGCACAATCTCATTAACCTACCTATAAATCCTAGTCGTCCAAAGGGGACCATACGGGGATGTCCTAGTTGCAATAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAAGGATGCAATAAGAGAAGATTTGGAAGAAGCTCCTATCTTCTACCCAACAGAAGAGGAATTCAAAGACACGCTTACATATATTGCAAGTGTACGTTCCAAAGCAGAAACTTATGGAATTTGCCGAATTGTTCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCGGCGAATTGATGGACATCAAGAAATTATGGCCAGTGCTTGTGAAAATACAAAAACCAAGAGAAAAAGAGATGTAGAAGTAACTTTGGGCTCTCAGCTTTGTAAAAGAAACACTAGCAACCCAAATAACCATAATGTTGAAGAATGTGATTGTGAGTCTGAACCAGGTCCTAAATTCAGTCTCAAAACATTTAAGGAATATGCAGATGTGTTTAAGAACCAGTACTTTAATTACAATGATAAGAAGAAATTCATAGGTTCCAGTATAAAATTAGCTATACCTGAGCAGTCGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGTCGAATTGTTCAAAATCCATCTGAAGAAATTGAGGTGCTTTGTTGTAATAAATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTACAGTTTCTGATCCTGTGGGGGCAAACGCTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATTCTTTCAGGTTCCCTTCTTTCGTTTGAAAGCCCTGATGTTTTATGTAACCTAGATCCCAATGTTAGTGTGGGAATGTGCTTCTCTGCTGTCAACTGGGAGATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTCTATCGTTGTGTTCAGTATCCTCGTGAATTTGTTCTCGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAATCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAACGTTGTAGAGCTTTATCGTGAACAGAGGAAGAAGACATTATTTTCATATGACAAGCTTTTATTAGGAGCTGCAAATGAAGCTGTCAGGGCCCAGTGGGAAACTGGTCTATGCATGAAGAGCACATCCTCCGACAGCTTAACATATAAAGGTGCCTATATAAAAAATGAGTTCTTAACAAAAGCTTTCAACTTTCGCATTCAGAGTGAAATTTTGAAGAGGAAATTTCTTACGAGTTCATTACTATCACAAAGAATGGATGAAAAATTTTATGCCACCTGTAGGAGGGAATGCAGTATTTGCCTGTGTGATTTACACCTATCTGCTGTTGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTATTGCACTTGGAGCAACAAAATTTTCTTCTACCGTTATGAAATCAGTGAGTTAAATGTTCTTCGTCAAGCTTTGGAGGGGAAATTAAGTGCAGTCTTTAAATGGGCCAAAGAGTATCTCGGATTAACTCTGAACTCTGCTGCCTCCAAGAGATCAAAAGCACGCTCAGAAAACGTTAGTGGTTCAACCTTCCCTTCCCAAGACTTGCATACGAAAAAATCTATATCCCATACAGCAGCAAATGAATCAAAAGAGAAACTACGTCAATTGCAGGAAATATTGAATGCATCAAAGAAAAAACAAAATGAAGAGGTTTCCCAGGTCTCGCAGACTTCTGGTGGCACTCACAGTTCATATGACACTCATTCGAAAACGAAGACAGATTTGCCTCAGTCAAGCTGTGCAAGTGGTGCGAAAGGAATCAGTTCTGTTGGCACCAAAATTGATACGGAGATGGTTGGGAGCAAGGTAACAATTTCAAAGAAAGGAGATCCAAAAGCATCGAAAGTCTCTTCAGTTACAAACTTACGGTACTTGTCTTTTCTACAAGAACATGTGTTACTTGATGTTTCATCTGATAGTACGAGTACCTCTTCATCGGACTCTGAAGTTGCATAA 2460 0.3972 MEEAGYDCPKFQENENLAVPPGFVSLTSFILRKSGNVKKNDNSTAFPVASEQEPNCMKTELETNGIDAYRQGLIRRPWINMDPSNNHKPKESHTKHLPMVKLGILHFFGLDNFSFSFCEHNLINLPINPSRPKGTIRGCPSCNNCVKVTARWHPKDAIREDLEEAPIFYPTEEEFKDTLTYIASVRSKAETYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQVRRIDGHQEIMASACENTKTKRKRDVEVTLGSQLCKRNTSNPNNHNVEECDCESEPGPKFSLKTFKEYADVFKNQYFNYNDKKKFIGSSIKLAIPEQSEPSVENIEGEYGRIVQNPSEEIEVLCCNKLEAGVFSSGFPTVSDPVGANAYPEYLKSGWNLNNILSGSLLSFESPDVLCNLDPNVSVGMCFSAVNWEMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSESVSFAPLEWLLHGQNVVELYREQRKKTLFSYDKLLLGAANEAVRAQWETGLCMKSTSSDSLTYKGAYIKNEFLTKAFNFRIQSEILKRKFLTSSLLSQRMDEKFYATCRRECSICLCDLHLSAVGCSCSNDKFACLDHAKHFCYCTWSNKIFFYRYEISELNVLRQALEGKLSAVFKWAKEYLGLTLNSAASKRSKARSENVSGSTFPSQDLHTKKSISHTAANESKEKLRQLQEILNASKKKQNEEVSQVSQTSGGTHSSYDTHSKTKTDLPQSSCASGAKGISSVGTKIDTEMVGSKVTISKKGDPKASKVSSVTNLRYLSFLQEHVLLDVSSDSTSTSSSDSEVA 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02211 819 MobiDBLite consensus disorder prediction 669 688 - -
Vian2g02211 819 Pfam C5HC2 zinc finger 583 633 IPR004198 -
Vian2g02211 819 Pfam JmjC domain, hydroxylase 425 475 IPR003347 -
Vian2g02211 819 MobiDBLite consensus disorder prediction 712 755 - -
Vian2g02211 819 SMART cupin_9 382 492 IPR003347 -
Vian2g02211 819 Coils Coil 694 718 - -
Vian2g02211 819 SMART JmjN_1 164 205 IPR003349 -
Vian2g02211 819 PANTHER LYSINE-SPECIFIC DEMETHYLASE 427 748 - -
Vian2g02211 819 ProSiteProfiles JmjC domain profile. 326 492 IPR003347 -
Vian2g02211 819 Pfam jmjN domain 166 199 IPR003349 -
Vian2g02211 819 MobiDBLite consensus disorder prediction 714 754 - -
Vian2g02211 819 Gene3D Cupin 428 521 - -
Vian2g02211 819 ProSiteProfiles JmjN domain profile. 165 206 IPR003349 -
Vian2g02211 819 Gene3D Cupin 150 427 - -
Vian2g02211 819 MobiDBLite consensus disorder prediction 669 698 - -
Vian2g02211 819 SUPERFAMILY Clavaminate synthase-like 288 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02211 Vian-Chr2 42192080 42197194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02211 15 710 JUMONJI Transcription Factor Family AT2G38950 34.902 9.64e-120 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian2g02211 zf-C5HC2 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02211 K11446 - cave:132166310 592.423