Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02194 ATGGAGGAGTTAAAGGAAAAGGTGAGTGAAAAGGAAACAGAGAAAATAAAGTACAGAGGAGTAAGAAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTAGAGATTCAGCTAGAAATGGAGCTCGCGTGTGGCTTGGGACCTTTAACACTGCTGAGGAAGCAGCAAGAGCTTATGATCGTGCTGCCTTTGAAATGAGAGTTGAAGCAGTAAGGTTCATCGGTGAAGAAGATGTAGTTGGAAGCGGCAGAGTGCATGCAGGGGTTCGTGTCAGTCCCCACATTAGCCAACATTGTCCAAACCGGAACCTGGTAGTGGAGTCCCTCCAAGACATGGGTTTCAAGGCACTCAGAAATGGTGTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACGAAATCTAGGGTTAGCAGGAGTGGTGCTAAAAAGGTTAAAAGGGTTTGCACCAAATTGAAACCGGATCCTATTGCTGAAACTGTGTTGGTCTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGGTCCTGA 561 0.4688 MEELKEKVSEKETEKIKYRGVRRRPWGKFAAEIRDSARNGARVWLGTFNTAEEAARAYDRAAFEMRVEAVRFIGEEDVVGSGRVHAGVRVSPHISQHCPNRNLVVESLQDMGFKALRNGVSPLLELKRMHVMRTKSRVSRSGAKKVKRVCTKLKPDPIAETVLVLEDLGPEYLEQLLTFTSPGSWS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02194 186 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Vian2g02194 186 Coils Coil 1 21 - -
Vian2g02194 186 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vian2g02194 186 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vian2g02194 186 SUPERFAMILY DNA-binding domain 17 66 IPR016177 GO:0003677
Vian2g02194 186 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Vian2g02194 186 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vian2g02194 186 CDD AP2 17 66 IPR001471 GO:0003700|GO:0006355
Vian2g02194 186 Gene3D AP2/ERF domain 16 72 IPR036955 GO:0003700|GO:0006355
Vian2g02194 186 PANTHER DNA-BINDING DOMAIN 10 68 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02194 Vian-Chr2 41927704 41933428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02194 8 185 AP2-EREBP Transcription Factor Family AT3G23240 43.017 1.53e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g02194 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02194 - K14516 gmx:100818907 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02194 2 41927704 41933428 Vian2g02194 2 41927704 41933428 ECH
Vian2g02194 2 41927704 41933428 Vian3g02685 3 41636086 41636736 PCT