Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02188 ATGACTGGTTCTCCGTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGCTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGCGCAAGCAATGTCTCAAAGCTACTTGCTCACCTTCCTGTCAGTGAACGTTGTGAAGCTGCTGTAACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAAGTAGCTCATCTCAGGGAACAGGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACTTTGGAAAATCTACCAATTTTCCGCAGTATCTTGATAGTTGGTTCCAGACGGAGAATTCCAACTCGGCTTCACAATTTCTTCCTAAATTGTCCACCGATACTTCAACACAGTACTATGGAAATACTGATACCTTCATGGACCCAAACCCTATTGGAAATGATGACAATTCCGTAACAGTAGAGGAAAGCATCTCCTTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGGCCTGTGACGTGCAAAGGCAGTGGACCTTTTATCAAGTGGATAACCTTCAGTAA 651 0.4347 MTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSERCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQVAHLREQAGQIYLNASATENPNEKYFGKSTNFPQYLDSWFQTENSNSASQFLPKLSTDTSTQYYGNTDTFMDPNPIGNDDNSVTVEESISFSSFEESCNSMACDVQRQWTFYQVDNLQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02188 216 Coils Coil 85 105 - -
Vian2g02188 216 ProSiteProfiles LOB domain profile. 4 106 IPR004883 -
Vian2g02188 216 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Vian2g02188 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02188 Vian-Chr2 41830038 41830801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02188 5 135 AS2 family AT3G58190 73.684 6.85e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian2g02188 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02188 K13945 K13944 gmx:100816960 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02188 2 41830038 41830801 Vian2g02188 2 41830038 41830801 ECH