Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02187 ATGGCTTCTGCAAGTGGAAATGGAGGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTCGCTGCCATACATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCGAGGAACATGGAGAATAATAATCATCAGTGGGCAGGGAATCATAGTGTTGCAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATGAACGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGAAAGAGCATACAACAACAATGAGTTGGGTGAGCTGCAAGAACTGGCGCTCAGAATGATGAGGAACTGA 528 0.4735 MASASGNGGSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVACLQAQLMQVKAQLAQNLMESRNMENNNHQWAGNHSVAMNHPFCPTYMNPISPQSSLESIDHSSMNDGMSMQDIQSREERAYNNNELGELQELALRMMRN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02187 175 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 76 - -
Vian2g02187 175 Pfam Lateral organ boundaries (LOB) domain 16 78 IPR004883 -
Vian2g02187 175 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02187 Vian-Chr2 41818415 41819879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02187 3 175 AS2 family AT2G42430 43.673 6.56e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian2g02187 LOB 4.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02187 K13944 - gmx:100801508 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02187 2 41818415 41819879 Vian2g02187 2 41818415 41819879 ECH
Vian2g02187 2 41818415 41819879 Vian3g01794 3 20382941 20383776 PCT