Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02170 ATGCCTGCCCACGCGCCTCCAATCAACAAACACTCTCCGCCGCCGCCCAAAGAGGTCCATTTCAGAGGCGTCCGCAAGCGTCCCTGGGGCCGCTTCGCCGCCGAGATCCGCGATCCCTGGAAAAAGACCAGAAAGTGGCTCGGAACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACACCGCAGCAAGAACGCTCCGAGGGCCCAAGGCCAAAACCAACTTCACCTACGTCGTTGCTCCTGCGATTTTCGCTGCCCCTGAATCTCAGGCCCCAGCCCATGACCCGCTCGCTAGACCGGTCGAGTTCTTCGGCCTTCCCTTGTTCTTCACCACGGATGCAGATTCCGGGGCGCCGGTGAGGTCGGAGTACAAGGGCTACAAATTGGAGAACATTGCCGGATTTGTGGTTACCAAGGAAGAGAAGAAGAAGCCGTTTTTGTTCGACCTTAATCAGCCGGCGCCGCTCTTCTGA 477 0.5975 MPAHAPPINKHSPPPPKEVHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVVAPAIFAAPESQAPAHDPLARPVEFFGLPLFFTTDADSGAPVRSEYKGYKLENIAGFVVTKEEKKKPFLFDLNQPAPLF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02170 158 MobiDBLite consensus disorder prediction 1 21 - -
Vian2g02170 158 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Vian2g02170 158 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vian2g02170 158 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vian2g02170 158 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vian2g02170 158 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vian2g02170 158 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Vian2g02170 158 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vian2g02170 158 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vian2g02170 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 93 - -
Vian2g02170 158 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02170 Vian-Chr2 41618699 41619175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02170 17 76 AP2-EREBP Transcription Factor Family AT5G44210 90.000 1.02e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian2g02170 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02170 K09286 - gmx:100816599 236.498