Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02158 ATGGGGAGCTATGAAATTGAGCTGAATCTTAGGGCCACAGAGTTGAGGTTGGGATTGCCAGGGAGTGATGAACCTCAAGAGAAACGTCCATGCAGTGGCTCTGTTGTCAGAAACAGCAACAAGAGATCTTCACCAGAATTGGAAGAGTCCAGGTGCAAAAACAACATCTCTGATTCTTCGAACTCCACAACCACAAGTGATCACAACGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCGATTAGATCTTTTAGGAAGAACAGTCTACAACAGAAAAAGGTGGAGCAGGGCGATGGAACTGGAATGTACGTAAAAGTCAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACCAAAGCTACCCAGAACTCCTCAAGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATACTCAGAAAGGGAGGGATACAACGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCGTATTCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTATGA 609 0.4565 MGSYEIELNLRATELRLGLPGSDEPQEKRPCSGSVVRNSNKRSSPELEESRCKNNISDSSNSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYVKVSMAGAPYLRKIDLKVYQSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVFSCKRLRIIKGSEAKGLGCL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02158 202 SUPERFAMILY CAD & PB1 domains 102 190 - -
Vian2g02158 202 FunFam Auxin-responsive protein 101 202 - -
Vian2g02158 202 MobiDBLite consensus disorder prediction 17 77 - -
Vian2g02158 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 197 IPR003311 GO:0005634|GO:0006355
Vian2g02158 202 Gene3D - 101 202 - -
Vian2g02158 202 MobiDBLite consensus disorder prediction 54 73 - -
Vian2g02158 202 Pfam AUX/IAA family 13 200 IPR033389 -
Vian2g02158 202 ProSiteProfiles PB1 domain profile. 106 198 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02158 Vian-Chr2 41506403 41507316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02158 97 199 B3 DNA Binding Superfamily AT2G46530 36.893 8.35e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian2g02158 AUX_IAA 8.9e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02158 K14484 - gmx:100792134 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02158 2 41506403 41507316 Vian2g02158 2 41506403 41507316 ECH