Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02143 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGTACAAAACTTCAGGACCTGGGTGGACTCACTCACGCCCTTTCTAACATTTCTCCTCAACAACAACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCTACCAATAGGTTTGTTTGCGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCACAGGAGGGGCCATAACCTCCCCTGGAAGCTTAAGCAAAGGAGCAGTAAAGAGGTAAAAAAGAAAGCTTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCCAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACATTACTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGTAGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACTCAACAACAGAACTTCCAAAACCACCATATGACCAGCTTCAACCAATGGGACTCGTCTCAAGAAAACCCTAACCCTAGCAACATTGCCACTTCCCTCCAAATCAAGCCAGAATCTCAAACTTTCCACAACCCCACTCTCTCTTCACTTCTTCAACACCAAGAGCAGCCACATCCCAACAAGGGCATGATAACCTCACCCTTCGGGAACCTCCACGTGTCCTCACAAGCCTCCAGCGCTACCACGTCAGCATACATGTCAGCCACTGCGTTGCTTCAAAAGGCTGCATCCGTTGGAGCCGCTGCCATGACGGGCCCAGGCCCTGCTGCTGTTGGGCCTCGGAGCGCAATGGGTCACGTGACTCAGCTCGGAACAGCAAGCCAACTCGACCCTCTGGTGGTGCCGGATAGCTACATGAGAGGATTCCCCGGTCGTAGCCTCAAGAGTGACCGTCTCACTAGGGACTTCCTCGGACTCACGCCAGAAGCTAACGGCGACGTTGACGGCACCGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGACGTTCGCAGGGGGTGTAGAGTACCACCAACCGCTCCGTCAGCATCACCACCACGGGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1374 0.5095 MFPTAISNSTSLSEDASVSSGTKLQDLGGLTHALSNISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVAATTTTNPFQSLFLFQTQQQNFQNHHMTSFNQWDSSQENPNPSNIATSLQIKPESQTFHNPTLSSLLQHQEQPHPNKGMITSPFGNLHVSSQASSATTSAYMSATALLQKAASVGAAAMTGPGPAAVGPRSAMGHVTQLGTASQLDPLVVPDSYMRGFPGRSLKSDRLTRDFLGLTPEANGDVDGTAVDVSTNVKDMLTFAGGVEYHQPLRQHHHHGLLKPQQGFGFLETTTAPETWGNC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02143 457 Gene3D Classic Zinc Finger 72 99 - -
Vian2g02143 457 Gene3D Classic Zinc Finger 110 200 - -
Vian2g02143 457 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Vian2g02143 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Vian2g02143 457 FunFam protein indeterminate-domain 12-like 55 123 - -
Vian2g02143 457 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vian2g02143 457 MobiDBLite consensus disorder prediction 1 59 - -
Vian2g02143 457 MobiDBLite consensus disorder prediction 1 48 - -
Vian2g02143 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 403 IPR031140 -
Vian2g02143 457 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Vian2g02143 457 SMART c2h2final6 76 98 IPR013087 -
Vian2g02143 457 SMART c2h2final6 152 172 IPR013087 -
Vian2g02143 457 SMART c2h2final6 117 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02143 Vian-Chr2 41335578 41338819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02143 15 444 IDZ Gene Family AT4G02670 49.778 1.83e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g02143 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02143 K25870 - gmx:100788975 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02143 2 41335578 41338819 Vian3g01395 3 15341743 15345168 PCT
Vian3g01854 3 21395126 21398152 Vian2g02143 2 41335578 41338819 PCT