Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02137 ATGGAGCAGTACGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAATGTATGTTCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATTTGGGATTTTGGTGTGTTGTATACTATCCGCATGCTAAAAATTGTGGATGCAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCCAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCATTTAAAGCACTTTCGAGGGCTCGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTATAAATGCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGCATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAATTATCTGTAGGTTGTGTTGGTAACAAATACAATCCTGGTACGAAGTTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCAGTTACAGTTTCTGCCACTGCCAAAAGGCAAACAATGGCACCATCAAAGACAACCTATCCTGGTCCAGACCGAGATTCACTTCCAGCATCTAAGGGACCATCTGGAAGGTTTTCCTCACCAACAAGAGCCAGAGCGACGACAAACTTGTACACCAATTTCTGTGTCCTTGGAAGTGTGGACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATACCCAATGGCTTACAGTGAGGATCCTTTTTTCCCTGTTCGTGGACCATCATCAACTTCAGCTCGCTTCTCTTCAAGCTCAACACGGAGTACTGCTGATTGCTCCATCACAATGGTCAAGTGTACAATTCAGGAAGACAAAGTTACTGTCCCCAACATTATCAGTGATGCTTGCCCTGGTCCAAAGGCAACTCAATGCCCTTCTGAGCATGTAAAAGCTTGCGTTTCTATTCGCTCCTCTGCTGAGGTGGATCAGCGCCGCTTTGACACGTCATCATACCAGCAACGTGCAGAGGCTTTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTTCAACAACAAAGGTTTGATGAGCTAGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCTCCTAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1440 0.4479 MEQYEILEQIGKGAFGSALLVRHRHEKKMYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDIWDFGVLYTIRMLKIVDAGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALSRARQKYAAEKSRAEANYKCLSFSKDRALNPSISGTEQVSQCSTQRAHGLSTCSEEKIYELSVGCVGNKYNPGTKFSTVERTPRLRAVTVSATAKRQTMAPSKTTYPGPDRDSLPASKGPSGRFSSPTRARATTNLYTNFCVLGSVDSPNVSVNAPRIDKMAEYPMAYSEDPFFPVRGPSSTSARFSSSSTRSTADCSITMVKCTIQEDKVTVPNIISDACPGPKATQCPSEHVKACVSIRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02137 479 MobiDBLite consensus disorder prediction 257 295 - -
Vian2g02137 479 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vian2g02137 479 SUPERFAMILY Protein kinase-like (PK-like) 2 179 IPR011009 -
Vian2g02137 479 Gene3D Transferase(Phosphotransferase) domain 1 94 228 - -
Vian2g02137 479 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vian2g02137 479 Pfam Protein kinase domain 107 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02137 479 Pfam Protein kinase domain 4 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02137 479 Coils Coil 164 184 - -
Vian2g02137 479 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vian2g02137 479 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 91 - -
Vian2g02137 479 ProSiteProfiles Protein kinase domain profile. 4 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02137 Vian-Chr2 41260894 41266706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02137 1 208 AGC Kinase Gene Family AT3G08730 24.609 1.75e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vian2g02137 Pkinase 1.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02137 K08857 - gmx:100805201 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02137 2 41260894 41266706 Vian2g02137 2 41260894 41266706 ECH