Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02121 ATGAGAGAGGGACAAAGCTTGAATTTAACCAATGAGAGGAAGAGAGGGAGAAGAGATGAACCAGAATGCTCAATGAGGCTTCAGGTGCATCTCAGGACGGGACAAATTCCCAGAAGCCGCAACGGAAACGTGCAAACGCAATTGGGTAGCGGTGGATTTCGATTTTCTGGAAATTCAAACCATTCAAATGATAAGCTTTTGGGGCTGGAATTGATTTCCAGACTTCACCGCCGCACCAGAGGTTTAAGACGCTTAAGGAAGATACATGGTGTGGATTTGGCGAATCGAACTCTGGATATATGCCCCAGAAGAATTATCAAAACTGAAATAATAGAAGGGAGTGCGCGAATACCTCAGGGCGAGATGAATCAACCTGAGAAGGTTGCGAGAAATGAGAACAAAGTCGTGATTGAGGAGGAAAAGGGTGTAAACACCCTGGCAAGAGTGGAGAGGATGAATTTCTCAAAAGAAAAACGGTTTTCTCCAAGAAATAACAGGACACGTAGAAAGCTGAACACAGGAAAACGAACTGTGTTTTCGTGGATGATTGCTGCGAAAACTATCAAATCACGAGAGAGGGTTTATTACATGGATCACAAGAGTAAAGCTGTGTCACTGGGTGGAGATGTCGTTGGAGATGGCATTCTGTGTGACTGTTGTTCTCAAGTTGTGTCCATTTCTGAGTTTGAATTTCACTCATGGAGGCAAGAACGCTTTGATTCAGTGGAAAAAATATCCGATCCACTACGAAACATATGTTTGGGGAGAGGAAGAGGACTTTGTCTCTTGGAATGCATGGCAGAAGCCTGGAATAAGCAAAGTGGTTTTTCTTCTAAATTTTATAACTTGGTTCGTGATGATGACGACGAAAAAAGCGACGACATTTGTAGAGTTTGTGGGGAAAAGGGAGATCTTCTTTGTTGCGATGGTTGTCCATCAACTTTCCATCAGAGCTGCTTGGGTATACAAACAATTCCAGAAGGTGAGTGGCACTGTATGAGTTGCTGCTGCAAATTTTGTGGTTTGCGGTGTGGAAAGACTGAGATCACCTTTGAAGGCCTTGGCCCGTTTGAGATGTCGACCGAATGCCTTGTATGCGAGAGAAGATTTCACCGATCCTGTCTTAAGGCCAATGGAGGCAATTCTTCTCATAACAAAAGGTTATCCTTATGTGGAAACGGATGTAGGGAGATATATGAGAGACTTCAAAGGCTTCTTCGTGTTAAACATGATATAGAGGATGGATTTTCTTGGTCTTTTATTTACCGGGCAGATACTGACCCTAATATAACAAGGTTAGATACCGAAAAGGTGGAATGCAATGCTAAACTGGCTGTTGCATTATCGGTATTGAGTGAGAGCTTCATGCCATACATTGAAGAAGGAAGCGGGACAAATATAATCAAAAGTATTGTATATAGTTGTGGGTCAAACATCCCTCGCCTGGACTGTAAAGGGTTTATTACTGTGATTCTAGAGAAGGATTATGAGATTATCAGCGTTGCATCAATCAGGATTCATGGGAACAAACTAGCAGAGATGCCATTTGTTGCGACTGTTTTTTCTTATAGGAAGAAAGGAATGTTCGCTCGGCTTCTAAGAATAATTGAATCGACACTCAGCCACCTCAACGTTGAGTTATTGGTGGTACCAACCGTGAAACAAACAAAAGAAACTTGGGTTCGTTCTTTTGGGTTTGAGCCACTCGATTTGAGAACAGAGAAAATATTAAAGGGCGTGAATATGATGGTATGTCGTGGCACAGAAAAGTTACTGAAGAAGATACCAAAGCTTACATAA 1800 0.4228 MREGQSLNLTNERKRGRRDEPECSMRLQVHLRTGQIPRSRNGNVQTQLGSGGFRFSGNSNHSNDKLLGLELISRLHRRTRGLRRLRKIHGVDLANRTLDICPRRIIKTEIIEGSARIPQGEMNQPEKVARNENKVVIEEEKGVNTLARVERMNFSKEKRFSPRNNRTRRKLNTGKRTVFSWMIAAKTIKSRERVYYMDHKSKAVSLGGDVVGDGILCDCCSQVVSISEFEFHSWRQERFDSVEKISDPLRNICLGRGRGLCLLECMAEAWNKQSGFSSKFYNLVRDDDDEKSDDICRVCGEKGDLLCCDGCPSTFHQSCLGIQTIPEGEWHCMSCCCKFCGLRCGKTEITFEGLGPFEMSTECLVCERRFHRSCLKANGGNSSHNKRLSLCGNGCREIYERLQRLLRVKHDIEDGFSWSFIYRADTDPNITRLDTEKVECNAKLAVALSVLSESFMPYIEEGSGTNIIKSIVYSCGSNIPRLDCKGFITVILEKDYEIISVASIRIHGNKLAEMPFVATVFSYRKKGMFARLLRIIESTLSHLNVELLVVPTVKQTKETWVRSFGFEPLDLRTEKILKGVNMMVCRGTEKLLKKIPKLT 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02121 599 MobiDBLite consensus disorder prediction 1 21 - -
Vian2g02121 599 Pfam Tify domain binding domain 208 268 IPR032308 -
Vian2g02121 599 SUPERFAMILY FYVE/PHD zinc finger 282 342 IPR011011 -
Vian2g02121 599 SMART PHD_3 339 396 IPR001965 -
Vian2g02121 599 SMART PHD_3 295 336 IPR001965 -
Vian2g02121 599 PANTHER PHD FINGER PROTEIN 12 135 594 IPR042163 GO:0003714|GO:0045892
Vian2g02121 599 ProSitePatterns Zinc finger PHD-type signature. 296 335 IPR019786 -
Vian2g02121 599 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 488 574 IPR016181 -
Vian2g02121 599 ProSiteProfiles Zinc finger PHD-type profile. 293 338 IPR019787 -
Vian2g02121 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 397 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02121 Vian-Chr2 41065340 41072971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02121 173 595 PHD Transcription Factor Family AT1G05380 41.218 6.78e-108 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02121 - - pvu:PHAVU_001G152900g 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02121 2 41065340 41072971 Vian2g02121 2 41065340 41072971 ECH
Vian2g02121 2 41065340 41072971 Vian3g01877 3 21824966 21832444 PCT