Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02097 ATGGCTGCACCGCCAAATAGCATTCAAAACATGTTAAGGGCTGCAGTGCAATCAGTTCAATGGACTTACAGCCTCTTCTGGCAACTTTGTCCCCAACAAGGGATTTTGACGTGGGGTGATGGATACTACAACGGAGCAATTAAGACTAGGAAGACGGTTCAAGCAATGGAAGTTAGCACCGAGGAAGCTTCTCTGCAAAGAAGCGAGCAGCTTCGAGAGTTATATGAATCTTTGTCTGCTGGAGAAGCGAACTCGCAAACACGAAGACCATGTGCTGCTTTGTCTCCTGAGGATCTAACGGAATCAGAATGGTTCTATCTGTTGTGTGTCTCTTTCTCCTTTCATCCTGGTGTCGGGTTGCCGGGAACAGCATATGCCAGGAGGCAGCATATATGGCTAACTGGTGCAAACGAAGTAGAGAGCAAAGCATTTTCCAGAGCTATTCTTGCCAAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCGTGGTTGAGCTGGGCACAACCGACAAGATGGAAGAAGACCTAAATTTCATCCAACACATAAAGAGTTTCTTCATAGATCAGCACCCTCCGACGGCAAACCCTGCACTGTCAGAGCACTCCACCTCCAATCCCACATCTTCTTCATACCCAGTTGTCGTCACTGCCACTACTGCACCACCCAACAATATTCCCAACCAAAACGACATGAACGTCGTTGATAAAGGAAAAGAAGTTAAGTTGAATTCTGAAGCAGGATTAGCAGTTCGTAACAACAGTTTCATACCGACCGAACTAATGGAGCTGGACACGTTGGAAGGGTTTCGGGTCGGGTCACCCGGAGATGGATCCAATCACTTGGATTCGTTCCCCACAGAGGCGTCCATGGCACTGTGTTCTGCAGGTTTGGAACTTCTTCAACTTCAACTACCACCACAACCTCCAGAACACCCTCCCTCAGAAAACAAAGCACAAGGAGACACAGACACTCACTACTCGCAGACAGTGTCCAGCATCCTCCAAAAGAACTCCGGGTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACCGATTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCACCGACGAGTACCGCGGCCACTTCCAGATGACGGTGGCAGACGTAACATCGCAGTGGCTCCTCAAGTACATTCTCTTCAGTGTTCCTTACCTGCACGCCAACCGGGTAAAGGGGAAGAGCGCCCCGTCATACGAGACAAGCCATGTGATGGCGGAGCGGCGTCGGAGAGAGAAGCTGAATGAGAGGTTTCTGATTTTGCGTTCAATGGTACCTTTTGTAACGAGAATGGACAAGGCATCGATTCTGGGAGACACCATCGAATACATAAAACAGCTGAGGGAGAAGATTGAGAGCCTGGAGGCACGTGAGCGGCACGCGGGGAAGAGGAGGATGAGGGAGGTGGAGGTTTCGATCATAGAGAGCGATGCACTGTTGGAGTTGGAGTGTGTACATAGGGAAGGGTTGTTGCTGGATGTGATGACATTGTTGAGGGAGTTAGGGGTTGAAGTGATGATGGTGCAATCCTGGGTTAGGGATGATGGAATCTTTGTCGCAGAGATGAGGGCCAAAATCAAGGAAAATGGGAACGGGGAAAAGGCTAGTATTGTGGAAGTCAAGAATGCCCTAAACCAGATTATACCCCGTCATATACCCCACCATGACCCATACACATTGCCTTCCAATGATCATTTTTAA 1725 0.4951 MAAPPNSIQNMLRAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGEANSQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGVGLPGTAYARRQHIWLTGANEVESKAFSRAILAKTVVCIPVLEGVVELGTTDKMEEDLNFIQHIKSFFIDQHPPTANPALSEHSTSNPTSSSYPVVVTATTAPPNNIPNQNDMNVVDKGKEVKLNSEAGLAVRNNSFIPTELMELDTLEGFRVGSPGDGSNHLDSFPTEASMALCSAGLELLQLQLPPQPPEHPPSENKAQGDTDTHYSQTVSSILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGTDEYRGHFQMTVADVTSQWLLKYILFSVPYLHANRVKGKSAPSYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEARERHAGKRRMREVEVSIIESDALLELECVHREGLLLDVMTLLRELGVEVMMVQSWVRDDGIFVAEMRAKIKENGNGEKASIVEVKNALNQIIPRHIPHHDPYTLPSNDHF 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02097 574 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 406 455 IPR011598 GO:0046983
Vian2g02097 574 PANTHER TRANSCRIPTION FACTOR TT8 4 557 - -
Vian2g02097 574 SMART finulus 412 461 IPR011598 GO:0046983
Vian2g02097 574 MobiDBLite consensus disorder prediction 302 322 - -
Vian2g02097 574 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 185 IPR025610 -
Vian2g02097 574 Gene3D - 405 469 IPR036638 GO:0046983
Vian2g02097 574 Coils Coil 445 472 - -
Vian2g02097 574 Pfam Helix-loop-helix DNA-binding domain 409 456 IPR011598 GO:0046983
Vian2g02097 574 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 407 468 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02097 Vian-Chr2 40718279 40725684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02097 325 556 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.718 6.38e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g02097 bHLH-MYC_N 8.9e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02097 - - gmx:100780422 864.374