Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02086 ATGGATCAAGGGCATGAACGGGGACCGTACAATATGAATTCTAGACCTTATGATAGGAACATGGTTCCTGATGGTTGGTTTGACTGCCCAGCACATGGACAAGAATTAGGACGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAACGATAACATTCCACGTGAAAAATATACTCCTAAACAAGCGATTCATCAACAAAGAGTCTTAGGTCGGGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTATTATCCTCTATCAGATTGGACAAAAGAAGGAATTGCTCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATCAATCTGTACAAAAGTTCTGTGAGGAGGTTCAAGATTTTTGCTCCCAAAGAACAAATGAAAAGAAATATATACTTGTACATTGTACCCATGGGCATAATCGCACAGGTTATATGATTGTTCACTTTCTTGTGCGTACGAAATCTATGTCTGTTACCGAGGCGATAAATAAATTTGCTTTGGCACGTCACCCAGGAATTTACAAGCAGGACTATATTGACGCCCTGTACATGTTTTATCGTGAAAAGAAACCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAACTTCGGATCCTGATTATCGGGGCCCAACTGTCCCGGCTGTGGACAATTATGGGCACATTCCAGAACAGGAGAATATAGTCAGAAATGAAGTATTGACAACCGATGATGTTTTGGGAGATCCAATTCCTCCAAATCAGCTAAGAGCGATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGAACACAGGGGGAAGAGGACGATTGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGACAACCTGCAACTCTTGAGGCAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGCTATATGATGCTGATTACTTGTGATGAATGTTATTTGATTGACAGAAAATTTCTCTTCCACAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGGGTACACCTGAGAGAAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACAGGGATCCACACACACATAAGCAAGAGAGAAGATACCTCATCTATGATTTGATGGCAATCAATCAGGTCTCTTTGACAGAGCTGCCGTTTTATGAAAGGTGGAGATTGCTGGAGAAAGAAGTGATTGAACCTCGTAACATGGAGCGTGAGGGCCTTTCAAAAAATACCGATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGAAGGAAGGGATTTTGGTTACTATCCACTGTATCAAAGCTCCTACATAAGTTCATTCCACAACTATCGCATTCATCAGACGGTCTTGTATTGCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGTGAGGTGGGAGCTGGTGATCGTCCCATGCTTTTTCTGTTTGAACGTGGACGGAAGAAGTTCATGGAAGAGAATGTTATTTTTAAAGATGCATCAGACATTTCTTCCTATTCCGGAAAGATCATTGAATGCTACTGGGATTCCGGGGAGCATCATTGGGTCTGTATGCGGATAAGAATAGACAAAGCAACTCCGAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACTGAAGAAGTCTTATTGAATGAGATCAATAAGACAATTTGCCTACCCTTGTATGCAGACAGAATACAAAAGGATATCAAGGCTCATCAGCATATGGTCTCCTCAAGGCGCAAGTGA 1842 0.4142 MDQGHERGPYNMNSRPYDRNMVPDGWFDCPAHGQELGRIIPSKVPLGESFNDNIPREKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGIAHVKIRCKGRDAVPDDQSVQKFCEEVQDFCSQRTNEKKYILVHCTHGHNRTGYMIVHFLVRTKSMSVTEAINKFALARHPGIYKQDYIDALYMFYREKKPEDLVCPQTPEWKRTSDPDYRGPTVPAVDNYGHIPEQENIVRNEVLTTDDVLGDPIPPNQLRAMQEVCYQLLKLNTGGRGRLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDECYLIDRKFLFHRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDRDPHTHKQERRYLIYDLMAINQVSLTELPFYERWRLLEKEVIEPRNMEREGLSKNTDPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVLQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPMLFLFERGRKKFMEENVIFKDASDISSYSGKIIECYWDSGEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEEVLLNEINKTICLPLYADRIQKDIKAHQHMVSSRRK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02086 613 FunFam mRNA-capping enzyme isoform A 518 590 - -
Vian2g02086 613 CDD Adenylation_mRNA_capping 256 484 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vian2g02086 613 CDD RNA_5'-triphosphatase 25 191 - -
Vian2g02086 613 PIRSF mRNA_capping_HCE 10 613 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vian2g02086 613 Gene3D - 482 588 IPR012340 -
Vian2g02086 613 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 22 211 IPR029021 -
Vian2g02086 613 Pfam Dual specificity phosphatase, catalytic domain 74 194 IPR000340 GO:0008138|GO:0016311
Vian2g02086 613 ProSitePatterns Tyrosine specific protein phosphatases active site. 140 150 IPR016130 GO:0016311|GO:0016791
Vian2g02086 613 SMART dsp_5 50 195 IPR020422 GO:0006470|GO:0008138
Vian2g02086 613 Gene3D Protein tyrosine phosphatase superfamily 1 216 IPR029021 -
Vian2g02086 613 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 261 484 - -
Vian2g02086 613 Pfam mRNA capping enzyme, catalytic domain 285 483 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vian2g02086 613 FunFam mRNA capping enzyme, putative 244 481 - -
Vian2g02086 613 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 187 IPR000387 GO:0016311|GO:0016791
Vian2g02086 613 Pfam mRNA capping enzyme, C-terminal domain 505 581 IPR013846 -
Vian2g02086 613 PANTHER MRNA-CAPPING ENZYME 17 594 - -
Vian2g02086 613 FunFam mRNA capping enzyme family protein 18 230 - -
Vian2g02086 613 SUPERFAMILY Nucleic acid-binding proteins 486 595 IPR012340 -
Vian2g02086 613 Gene3D DNA ligase/mRNA capping enzyme 236 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02086 Vian-Chr2 40587205 40596010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02086 11 603 Protein tyrosine phosphatase (PTP) family AT3G09100 62.458 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02086 K13917 - vra:106758011 1266.14