Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02084 ATGACTATGTCAGTGATGTGTCGACCAACACATCAGGCTCTGAAAAACGTTCCTTCCGGTGGACAAAGCCAGATGATGAGGCCAAAAGAGAAGGTGGTGCTGGTCATGGGAGCAACGGGGAGCGGGAAAACCAGGTTGTCGGTGGACTTAGCAACATGTTTTCCCTCAGAAATCATAAACTCTGACAAAATGCAAGTGTACGAAGGGCTTGAGATTGTCACCAACAAGGCCACCAAAGAGGAGCAGCGTGGGGTCCCACATCACCTCCTGGGGACGCAGAACCCCGACACCGAGTTCACGGCCTCCGACTTCTGCGACGCCGCTTCACGCGCCATCGAGTCCATAACGCGCCGCGACAAGGTTCCGATAGTGGTGGGAGGATCCAACTCGTACATGGAGGCCCTGGTGGATAGGTTCGGGCCGCGGTTCGAGTGGTGCTTTCTGTGGGTCGACGTGTCCGTGCCAGTGCTCTATTCCTACGTGGGGCAGCGCGTGGACCACATGCTCCGATGTGGAATGGTGAACGAGTTGAGACCGTTTTTCAACGTGAACGGCGATTACACGCGTGGGATAAGGAAGGCAATTGGGGTTTCTGAATTCCACCCGTACTTCCGGCGGGAGACGACGGCGAGCGGTGAGACGAGGATGAGGCTGCTGCAGGAGGCGGTGAGGGACGTGAAGGGGAACACGTGCAACTTGGCACGCAAGCAACTTGGGAGAATCCACATGCTCCGAAGTGAGGGGTGGAAGATCCACCGCGTTTGCGCCACGCCCGTGTTTCAGAAACGTGGCCGCGACGCCAATGAGGCTTGGAACAACATGGTGGCGAAACCCTGTGCCTCCATTGTTTCTCAGTTTCTCTACAGTTCTGCCAATTCTGCTTCTGGGAGAGTCGCGCCTTCTATGCAACCAAACTAA 918 0.5621 MTMSVMCRPTHQALKNVPSGGQSQMMRPKEKVVLVMGATGSGKTRLSVDLATCFPSEIINSDKMQVYEGLEIVTNKATKEEQRGVPHHLLGTQNPDTEFTASDFCDAASRAIESITRRDKVPIVVGGSNSYMEALVDRFGPRFEWCFLWVDVSVPVLYSYVGQRVDHMLRCGMVNELRPFFNVNGDYTRGIRKAIGVSEFHPYFRRETTASGETRMRLLQEAVRDVKGNTCNLARKQLGRIHMLRSEGWKIHRVCATPVFQKRGRDANEAWNNMVAKPCASIVSQFLYSSANSASGRVAPSMQPN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02084 305 Pfam IPP transferase 142 238 - -
Vian2g02084 305 Pfam IPP transferase 65 141 - -
Vian2g02084 305 Gene3D - 29 287 IPR027417 -
Vian2g02084 305 FunFam Adenylate isopentenyltransferase 5, chloroplastic 154 251 - -
Vian2g02084 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 149 IPR027417 -
Vian2g02084 305 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g02084 305 MobiDBLite consensus disorder prediction 1 25 - -
Vian2g02084 305 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 154 251 - -
Vian2g02084 305 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 29 287 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02084 Vian-Chr2 40577251 40578168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02084 142 294 C2H2 Transcription Factor Family AT2G27760 32.044 3.39e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02084 K10760 - gmx:100777757 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02084 2 40577251 40578168 Vian2g02084 2 40577251 40578168 ECH
Vian2g02084 2 40577251 40578168 Vian3g01906 3 22414745 22415713 PCT