Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02072 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCAATGACTCCACCACCTCCTCCTCCTATTCTTTCAATTCCCATCCATGGTGGAGATCCATGGCAACTTTCACCAGAACGAAGCCTCACGTTAATGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACGCTAACGGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCCAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAAAAGAAGAGAGGAATCACCATTGCGACGGCTCATGTGGAGTATGAGACTGCCAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTGCCCAAATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACAAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGACGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAGATGGAGCTACGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATCAGAGGTTCAGCCTTGTCTGCTTTACAAGGTACAAATGACGAGATTGGAAGACAAGCGATTCTAAAATTAATGGATGCTGTAGACGAATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCTTTCTTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGGCGAGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTAGGTGAAGAAGTGGAGGTGTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCGGGTGACAATGTTGGTCTTCTTCTCCGTGGTCTGAAGCGTGAAGATATTCAACGTGGTCAGGTGATTGCAAAGCCAGGTTCTATAAAAACATACAAGAGGTTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGCCGACACACCGCATTCTTCTCTAACTATAGACCTCAGTTTTACTTGAGGACAGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAGATGGTTATGCCCGGAGACAACGTTACAGCTGTGTTTGAATTGATTTCAGCAGTTCCACTTGAAGCGGGACAAAGATTTGCCTTGAGAGAAGGCGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAG 1353 0.4686 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPNDSTTSSSYSFNSHPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSIKTYKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELISAVPLEAGQRFALREGGRTVGAGVVSKVLS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02072 450 NCBIfam elongation factor Tu 54 449 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vian2g02072 450 Pfam Elongation factor Tu domain 2 279 349 IPR004161 GO:0005525
Vian2g02072 450 NCBIfam small GTP-binding protein domain 65 201 IPR005225 GO:0005525
Vian2g02072 450 SUPERFAMILY Translation proteins 259 355 IPR009000 -
Vian2g02072 450 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 258 IPR000795 GO:0003924|GO:0005525
Vian2g02072 450 PANTHER ELONGATION FACTOR TU-RELATED 57 449 - -
Vian2g02072 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 280 IPR027417 -
Vian2g02072 450 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 359 449 IPR009001 -
Vian2g02072 450 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
Vian2g02072 450 Gene3D Translation factors 394 449 - -
Vian2g02072 450 CDD EF_Tu 63 257 IPR041709 -
Vian2g02072 450 Hamap Elongation factor Tu [tuf]. 53 450 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vian2g02072 450 Gene3D - 54 257 IPR027417 -
Vian2g02072 450 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
Vian2g02072 450 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
Vian2g02072 450 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Vian2g02072 450 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Vian2g02072 450 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Vian2g02072 450 CDD EFTU_II 265 353 IPR033720 -
Vian2g02072 450 MobiDBLite consensus disorder prediction 27 46 - -
Vian2g02072 450 Pfam Elongation factor Tu GTP binding domain 62 255 IPR000795 GO:0003924|GO:0005525
Vian2g02072 450 Pfam Elongation factor Tu C-terminal domain 354 448 IPR004160 -
Vian2g02072 450 CDD EFTU_III 356 445 - -
Vian2g02072 450 Gene3D Translation factors 260 390 - -
Vian2g02072 450 FunFam Elongation factor Tu 53 257 - -
Vian2g02072 450 FunFam Elongation factor Tu 260 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02072 Vian-Chr2 40416224 40420219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02072 60 448 Eukaryotic Initiation Factors Gene Family AT5G60390 30.822 1.28e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02072 K02358 - gmx:100791600 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02072 2 40416224 40420219 Vian2g02072 2 40416224 40420219 ECH