Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02059 ATGCCACTGTTCTGGATCCTTGTCACCGTCTTCCTCACTCTCCCTGCGCTTTCCCTCTCCGATTCCTGTCCTCTCAACTTCGACCTCGTCCTTTCGAGCCCCTCATCGGACTCCAAGACACGGTGTATTTACATGCGCCAATCCCTTCGTATTCTTCAATCCGATTACCTCCACCGCACCGGTCTCTTCCCTCCTTCCAACGCCTCCTTCTCCTGCTGGACCGCTCTCCAAAATCACACCCACCAATACGACATTCGTTCCTCCTGCAACTTCCCTTCCTCTTCTTTTTCCCTCTCCTGCAACAACATCACCAACCGATCCCAATTCGAGCACCTTTTGCCTCTCTCAGCTCTTGAACCCATACGGAATACTTGTAACCATTCTCTCAACAGTTTCGCATCTTGTGCTCTCTGCACCAAAGCTTTGTCCAACTTGGACTCCCATCTCACGGACAATTCCACTGATTGCACGACTATTGCTTCTATCTATGCTGCTTCCTTCTCCAATCTGCAAGACCCCAGAACTGCTGGTTGTCTGTTCAACTTTGGTTTTCCTTCTTCAGTTTCAACTGGTAAGCGTCGAAACATTCTTATTGCGGCTTTTTGTGTTCTGGCCTTCTTCTTTGGTGTTTTTTGGGCTTACTTTAGATTGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGGATATTTGTAAAACTGAGATGGGTTTGGGTTCTGGGTTGGGTTCTATGAACCAGACTACTACTTTGATTAGGTTCACTTTTGATGAGATTAAAAAGGCTACTAGGAATTTCGCCGGTGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTACAGAGGGACGCTGGTTGATGGGACTCAGGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATCCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGCGTTAGGCATGTGAACCTTGTTGGCTTAAGAGGGTATTGTACTGCTACAACTAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAGAATGGGAGCGTTTATGATCATTTATTTGGTTCTGCTAAGCAGAAACTCAGTTGGCCAATTCGTCAAAAGATTGCTCTAGGCACTGCTAGGGGGTTGGCTTATTTGCACTATGGGGCCCAACCTTCCATCATCCATAGGGATATTAAAGCTAGTAACATACTTCTGGACCGCAAATTTGAAGCCAAGGTAGCAGATTTTGGGTTAGCGAAGTTCAAACCTGAGGGAATGACCCATATGAGCACTAGAGTGGCTGGAACCATGGGGTATGTCGCACCTGAGTATGCTTTGTATGGACAGTTGACTGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAGGGCTCTTGAAATTGACACTGATGGGCAACCCTCTGCAGTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAGAGCTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAATAGAAATTCTTGAGAAGCATGTATTGGTTGCTATACTATGTTGTCATCCTCAACTATATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGAGACGGAGGAATTAGTGTCCTCATTCTCTTGTATTGCTGGGAGGATTGATACTGAGAAATCTGTGTAA 1683 0.4522 MPLFWILVTVFLTLPALSLSDSCPLNFDLVLSSPSSDSKTRCIYMRQSLRILQSDYLHRTGLFPPSNASFSCWTALQNHTHQYDIRSSCNFPSSSFSLSCNNITNRSQFEHLLPLSALEPIRNTCNHSLNSFASCALCTKALSNLDSHLTDNSTDCTTIASIYAASFSNLQDPRTAGCLFNFGFPSSVSTGKRRNILIAAFCVLAFFFGVFWAYFRLKQKKKKKKKKDICKTEMGLGSGLGSMNQTTTLIRFTFDEIKKATRNFAGDNIIGKGAYGNVYRGTLVDGTQVALKRFKNCSVAGDPSFTHEVEVIASVRHVNLVGLRGYCTATTNLEGHQRIIVTDLMENGSVYDHLFGSAKQKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDRKFEAKVADFGLAKFKPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKRALEIDTDGQPSAVTDFAWSLVRNGRALDVIEDGMPELGPIEILEKHVLVAILCCHPQLYARPTMDQVVKMLETEELVSSFSCIAGRIDTEKSV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02059 560 CDD STKc_IRAK 270 539 - -
Vian2g02059 560 Gene3D Transferase(Phosphotransferase) domain 1 345 549 - -
Vian2g02059 560 ProSiteProfiles Protein kinase domain profile. 264 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02059 560 PANTHER OS01G0750732 PROTEIN 115 540 - -
Vian2g02059 560 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 223 343 - -
Vian2g02059 560 Pfam SPARK 20 153 IPR043891 -
Vian2g02059 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Vian2g02059 560 Gene3D Phosphorylase Kinase; domain 1 223 343 - -
Vian2g02059 560 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Vian2g02059 560 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 345 546 - -
Vian2g02059 560 SUPERFAMILY Protein kinase-like (PK-like) 242 539 IPR011009 -
Vian2g02059 560 Pfam Protein tyrosine and serine/threonine kinase 268 538 IPR001245 GO:0004672|GO:0006468
Vian2g02059 560 SMART serkin_6 264 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02059 Vian-Chr2 40326410 40328092 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02059 7 543 Receptor kinase-like Gene Family AT2G48010 57.451 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vian2g02059 PK_Tyr_Ser-Thr 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02059 - - vun:114194863 943.725