Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02056 ATGTCCCTTCCCTTTTATTTCTCCCTATGTTTTATTTTTTCTCTTTCATTTATTCTTCCGCCTCCTTCTCTGGCTGCCAACGACACCGTTCCCTGTCCCTTGAACATCACGGTGCTCCGCGTGGTGGGTGGCGGCGCCCGTCCCTCCTTCGACTCCGGCACTCAGTGCCATTACATCTTGCAGGCCCTCCACCTCCTCCAGGCGGACTACCTCCGCCGCAGCAACCTCTTCGTGCCGCCGCTCAACGCCTCCGAGTCCTGCTGGACCTCCTTCCAGTCCTTCATCAACGAATTCGACCCGAGCATCGATATCCGCTCCTCCTGCGGCCTCAAAACCGAGTGGATCTCCCAGGGCTGCATGAACATCACCACAAAACAGCAGTTCGAAGCCACCGTCCCCACCGCCGCAATCCAGGCCGTCCAAGGCAACTGCAACCAGTCCCTCGATAACAACGCCCCCTGCGCCCTCTGCACCACCAAAATCTCAACCCTTCTCTCCTACTTGACCGGCCCAACCGTCGGGAACGTCTCCGATTGCCGAGCCTATACTTCCATCTACGCCGCCTCTCTCTCTGACCAGTATGGTGCCACTGACCCCGGAACCGCCAAGTGCCTCTTCGGCCTCGATTTTTCCTCCCCCGGTTCCAGCGGTAAGCGCCGAACCATCGTTATCGTCGTTTCCGTTTTCTGTTTTGTGGCTTTGCTTGTTCTTGCTGCGGTTTGGACTTACATTAGATTCAAGAAGAGGAACGAGTTTGGGGGAGGGAAGGGTGTTGGAAAATCTGAACTTGGTTTGGGTTTGGGTTCTGGGTTGGATTCCATGAACCAGAGTACGACTTTGATTAGGTTCTCTTTTGATGAGATTAAGAAGGCTACTAGGAACTTCTCCAGGGATAACATGATCGGGAGTGGGGGTTATGGGAACGTTTACAAAGGAATGTTGCTGGATGGTAGTCCAGTTGCTTTTAAAAGGTTCAAGAATTGTTCTGTTGCCGGGGATGCTAGCTTCACTCACGAAGTTGAGGTTATTGCGAGTGTTCGCCATGTGAACCTTGTTACCTTAAGAGGTTATTGTACTGCCACCACCAATTTAGAGGGGCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTACGATCATTTATTTGGTTCTTCCAAGAAGAATCTCAGTTGTGCTCTGGATGTTGTTGAAGATGGCATTCCAGAGCCAGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGTTGTGTTCTCATCCACAGCTATATGCTAGACCAACAATGGACCAGGTTGTTAAAATGCTGGAGACAGATGAATCGGTTCCTTCGTTAATGGATAGGCCAATTCCTTTTATTGCTGGGAGGATTGACATTGAAAAATCTGCTCTCAGTAACTCGGGTCAGCTCTGCAGTCCAACCGGTTATCAAGCTTATACATTACAAAATCAACGCAAATCTATTTGTAAAGAAGATGAGGAAGAAGAAGAAGGAAGTTCAGTGGCTGATACTGTTACCACAGAATGA 1542 0.4981 MSLPFYFSLCFIFSLSFILPPPSLAANDTVPCPLNITVLRVVGGGARPSFDSGTQCHYILQALHLLQADYLRRSNLFVPPLNASESCWTSFQSFINEFDPSIDIRSSCGLKTEWISQGCMNITTKQQFEATVPTAAIQAVQGNCNQSLDNNAPCALCTTKISTLLSYLTGPTVGNVSDCRAYTSIYAASLSDQYGATDPGTAKCLFGLDFSSPGSSGKRRTIVIVVSVFCFVALLVLAAVWTYIRFKKRNEFGGGKGVGKSELGLGLGSGLDSMNQSTTLIRFSFDEIKKATRNFSRDNMIGSGGYGNVYKGMLLDGSPVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKNLSCALDVVEDGIPEPGPPEVLEKYVLIAVLCSHPQLYARPTMDQVVKMLETDESVPSLMDRPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQNQRKSICKEDEEEEEGSSVADTVTTE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02056 513 Pfam Protein tyrosine and serine/threonine kinase 298 394 IPR001245 GO:0004672|GO:0006468
Vian2g02056 513 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 150 392 - -
Vian2g02056 513 MobiDBLite consensus disorder prediction 490 513 - -
Vian2g02056 513 Gene3D Phosphorylase Kinase; domain 1 269 374 - -
Vian2g02056 513 ProSiteProfiles Protein kinase domain profile. 295 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02056 513 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 260 374 - -
Vian2g02056 513 SUPERFAMILY Protein kinase-like (PK-like) 272 393 IPR011009 -
Vian2g02056 513 Pfam SPARK 28 179 IPR043891 -
Vian2g02056 513 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02056 Vian-Chr2 40302748 40304673 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02056 397 486 Receptor kinase-like Gene Family AT2G48010 68.817 2.87e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vian2g02056 SPARK 7.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02056 - - gmx:100819453 632.869