Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02055 ATGGAGGACGAGGTGGATTCCCCTGTTGGTGTTCTTGAGGATTATTTTTTCAAGAGTTCAGAATCAGAAACTAGTTCTTCCAAAGAACCTGGTACCTCGGATTCTGATAAGTCAAAGCCCGGTTCTAGGTGGCATGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAGAAGCCGGTGGCCACATTGTATCCTCTGACTGTCCTCAAACTCTCCAGAAGATTCACCAGTGGCAGGAGGGAGACTGTGATAGATGCTTCTTCCTTTCATAGTTCACCCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCTCCCAAGAAAATTGTATTGGAAAAGGTGGTTATGCTGAGGTATACAAAGGGTGTTTGCCAAATGGTCAGCTGGTGGCGATTAAACGATTGGCACGTGGAGCAGAAAACGAAACTACAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCATCCCAATACTGCTAAATTAGTTGGCTATGGAGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTGAATGGTTCCAAGGAGAAGCTACCATGGCCTGTCAGGCAGAAAATAGCATTAGGAACAGCCAAGGGTATATTGTATCTTCACGAAGGTTGTCAAAGAAGAATTATTCACAGAGATATAAAAGCATCAAATATCTTGCTTACTGAGGACTTTGAGCCGCAGGCAGAACCTTTTCTGAAAAAGAATAATATCAGGGAGCTGATCGATCCTTCACTTGATGATGTTTTTGACAGTCGGCAGATTAAAATTATGGTTTTCACAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGCCCCTCTATGAACCAGGCACGTTCTCTTGTTGTACAGCTTCTGAATGGTAACGTTAGCTGCTCTAGCTTCACCAAGAAATCTCAACTTCCATTCACTCGAAAGGACTTTCTAGAAGAGTTCATTGATTCTGATTAA 1008 0.4266 MEDEVDSPVGVLEDYFFKSSESETSSSKEPGTSDSDKSKPGSRWHAFLQLLRVKSKKPVATLYPLTVLKLSRRFTSGRRETVIDASSFHSSPWKIFTHHEIQIATNYFSQENCIGKGGYAEVYKGCLPNGQLVAIKRLARGAENETTGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWPVRQKIALGTAKGILYLHEGCQRRIIHRDIKASNILLTEDFEPQAEPFLKKNNIRELIDPSLDDVFDSRQIKIMVFTASLCIQQSSIRRPSMNQARSLVVQLLNGNVSCSSFTKKSQLPFTRKDFLEEFIDSD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02055 335 PANTHER OS08G0249100 PROTEIN 247 328 IPR046958 -
Vian2g02055 335 MobiDBLite consensus disorder prediction 16 41 - -
Vian2g02055 335 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 78 182 - -
Vian2g02055 335 ProSiteProfiles Protein kinase domain profile. 108 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02055 335 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Vian2g02055 335 Pfam Protein tyrosine and serine/threonine kinase 111 242 IPR001245 GO:0004672|GO:0006468
Vian2g02055 335 SMART serkin_6 108 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g02055 335 Gene3D Phosphorylase Kinase; domain 1 69 182 - -
Vian2g02055 335 SUPERFAMILY Protein kinase-like (PK-like) 87 244 IPR011009 -
Vian2g02055 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vian2g02055 335 Gene3D Transferase(Phosphotransferase) domain 1 185 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02055 Vian-Chr2 40291698 40293945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02055 96 250 Receptor kinase-like Gene Family AT1G53420 44.025 8.82e-37 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian2g02055 PK_Tyr_Ser-Thr 4.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02055 - - gmx:100818913 415.231