Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02031 ATGGCTCCTGGGAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGAGTAATAGTACATCTACAAAATCTAGTATTGGGTTGAATGGAAAAAACGGAGTTAGTTCAAATAATGGGGTGTACGAATTACTTGGATGCTCTGTTTGCAAGAACTTAATGTATCCTCCAATTCACCAGATTTCCAACACACCCTTGTTGTTGTTGGACCTTTTCATTGAAGGCTATATGCACCTAATCCTCGTGTACTGTTCTGCCTATTCTACAGAGAAGATGTGTCCAAATGGCCATACATTATGTTGCCATTGTAAAGTTGAAGTCCACAATATCTGCCCATCTTGCCATCATGAACTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCGTTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCTTACTATACTAAGCTCAAGCACGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCTTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCAACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCTCATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTTCAGCTTGGCTCAGCTCCAGTATATATGGCTTTTTTACGATTTATGGGTGATGACTATGAAGCAAAGAAATTCAGCTACAGCTTAGAAGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGGATTCCAAGGAGCATTCGTGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTTGCGCTTTATTTTTCTGGTGGAGAAAGACAGGAGTTAAAGTTGAGAATCAGTGGGCGTATATGGAGAGAAGATTGA 1026 0.4064 MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSSIGLNGKNGVSSNNGVYELLGCSVCKNLMYPPIHQISNTPLLLLDLFIEGYMHLILVYCSAYSTEKMCPNGHTLCCHCKVEVHNICPSCHHELGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDYEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRISGRIWRED 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02031 341 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 201 335 IPR008974 GO:0005515
Vian2g02031 341 ProSiteProfiles Zinc finger SIAH-type profile. 146 206 IPR013010 GO:0008270
Vian2g02031 341 MobiDBLite consensus disorder prediction 20 43 - -
Vian2g02031 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 200 IPR013083 -
Vian2g02031 341 MobiDBLite consensus disorder prediction 28 43 - -
Vian2g02031 341 Pfam Seven in absentia protein family 135 334 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vian2g02031 341 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 29 339 - -
Vian2g02031 341 FunFam E3 ubiquitin-protein ligase SINAT3 143 201 - -
Vian2g02031 341 SUPERFAMILY TRAF domain-like 146 337 - -
Vian2g02031 341 FunFam E3 ubiquitin-protein ligase SINAT5-like 202 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02031 Vian-Chr2 39972985 39975335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02031 1 341 C3H Transcription Factor Family AT2G41980 71.261 5.16e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02031 K04506 - gmx:100500061 614.379